PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.388
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 482aa    MW: 54717.8 Da    PI: 4.6636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.388genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.39e-1261064701373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 
                                   lv+lL+ cAe + sg+ ++++ +L+rl e+asp g+p++R++ay+teALa r ++ +++++++ pp+e +++  +++e+ a
  evm.model.AsparagusV1_08.388 106 LVSLLTLCAESIISGNRAAINFFLSRLGEMASPIGSPIHRVVAYLTEALALRAVKIWPQVFSISPPREITDQIeHDDEAIA 186
                                   6899*************************************************************9999877679999*** PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                                   ++l+++vsPi++f h+t N+ +l+++eg++rvHiiDfdi++GlQWp+L+q+LasRp++p ++RiTg+g+    s++ l+ t
  evm.model.AsparagusV1_08.388 187 VRLLNQVSPIPRFLHFTLNERLLREFEGKDRVHIIDFDIKEGLQWPSLFQSLASRPNPPSHMRITGIGD----SRQDLQDT 263
                                   *********************************************************************....9******* PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   g rL+++Ae+l+++fef++ v++rled++l++L+vk+gE++aVn+vlqlh+ l ++ + +    ++L l++s++P ++ v+
  evm.model.AsparagusV1_08.388 264 GARLKSLAESLNLQFEFHP-VVDRLEDVRLWMLHVKEGECVAVNCVLQLHKALYDESQGA--LMNLLGLIRSTNPSILLVA 341
                                   *******************.7******************************996554444..488**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                                   e+e++hn++++  rf+++l+yy+a+fdsl++     s +rik+E++ ++r+i+n++ace  er+erhe++e+Wre++e+ G
  evm.model.AsparagusV1_08.388 342 EEESEHNDPRWEMRFANSLQYYAAIFDSLDSL--GSSLARIKIEEM-FARRIRNIIACEAMERVERHEKFERWREMIEDGG 419
                                   *****************************988..689*********.********************************** PP

                          GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   F+ + l+e++a q ++llr+++ ++ y++e+++++l+l W d++L++vSaW
  evm.model.AsparagusV1_08.388 420 FRCLDLGENEAIQSRMLLRMYSsGENYSIEDRENALTLKWFDQSLYTVSAW 470
                                   **********************9999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    
MLGYSVIQFF HPTHPMMSKE RGSGPVFTTS QLVQSFEEPL RFIEEETLDF GDEKDSGTSE  60
EGPSEGLQYC SGFSPSIPSR EELFGNPTWI RDHNESAQTE NQGLELVSLL TLCAESIISG  120
NRAAINFFLS RLGEMASPIG SPIHRVVAYL TEALALRAVK IWPQVFSISP PREITDQIEH  180
DDEAIAVRLL NQVSPIPRFL HFTLNERLLR EFEGKDRVHI IDFDIKEGLQ WPSLFQSLAS  240
RPNPPSHMRI TGIGDSRQDL QDTGARLKSL AESLNLQFEF HPVVDRLEDV RLWMLHVKEG  300
ECVAVNCVLQ LHKALYDESQ GALMNLLGLI RSTNPSILLV AEEESEHNDP RWEMRFANSL  360
QYYAAIFDSL DSLGSSLARI KIEEMFARRI RNIIACEAME RVERHEKFER WREMIEDGGF  420
RCLDLGENEA IQSRMLLRMY SSGENYSIED RENALTLKWF DQSLYTVSAW APISSSSSPS  480
S*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-154GRAS family protein