PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.3614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25160.6 Da PI: 7.9421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.3e-09 | 77 | 122 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRd++N++f eL ++l + + +K +K++iL A + +++L evm.model.AsparagusV1_08.3614 77 AFREKLRRDKLNDRFTELCSILDPG---RPPKADKVSILGDASRRLNHL 122 569*********************8...88************9999998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGSFQNNSGG GWLFDYGICD DAAASDLIWA PQIIDDPMVS STMLGFEVPC KEGSVSEKAC 60 SRKRNHVESL AVPGTKAFRE KLRRDKLNDR FTELCSILDP GRPPKADKVS ILGDASRRLN 120 HLRGEAEKIK ESNKALQDNI KSLKEEKLEL RDEKVRLKAE KERIEQMLKA ANTAPTFIPY 180 PPASNAAFAS YKTVAYPSYV PVGTWQWLPT AELDTSQDHV LRPPVA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-50 | bHLH family protein |