PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.3133

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 742aa MW: 81751.2 Da PI: 7.7611

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.3133	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	521	546	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG+C yGdrC+F+H++ evm.model.AsparagusV1_08.3133 521 YEPNCSYYMRTGYCGYGDRCRFHHPR 546 5799********************96 PP
2	zf-CCCH	37.6	3.8e-12	574	598	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tG+CkyG++Ck+ H++ evm.model.AsparagusV1_08.3133 574 QPACKYFLKTGICKYGSSCKYDHPR 598 689********************96 PP
3	zf-CCCH	36.2	1e-11	619	644	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG Ck+G +CkF+H++ evm.model.AsparagusV1_08.3133 619 GERECAYYMRTGKCKFGLTCKFHHPE 644 5799********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MFFPGSNNSQ DTSGVVLVPT RFVWPYGGRR VFVSGTFTRW SEPVLMSPVE GCPNVFQAIC 60 GVTPGFHQYK FYVDGEWRHD ERQPHVTGNY GIVNTLLLTR ELDPVPPSLG TDTHENRMNM 120 DVENDVFQCA VALSGGATQE ATMAISEADV EISCHRISEF LSTYTAYELL PDSGKVIALD 180 VNLPVKQAFH ILYEQGIPVA PLWDSYKKQF VGVLSPLDFI LILRELGNHG SNLTQEELET 240 HTISAWKEGR QLLYGQVDEH GRPIEKRLVH AGAYDSLKDV AVKILQNGVA TVPIIHSPFR 300 DGSFPQLLHI ASLSGILTCI CRHFRHTSNS LPILQQPICT IPLGTWVPRL GETNGRPLAM 360 LRPNASLGSA LALLVQAQVS SIPIVDDNDS LLDTYSRSDI TALAKDRVYA QIRLDEMSVH 420 QAIQLRQDSS SPNGFFDGQR CQMCLRTDHL LKVIERLANP GVRRVIIVEA GSKRVEGIVS 480 LSDVFRPQLL GPGLSKEKAT RESMWQMRLE PISPGYPKRP YEPNCSYYMR TGYCGYGDRC 540 RFHHPRDRSV CVDFRQVFGG GRMGSGDYPE RVGQPACKYF LKTGICKYGS SCKYDHPRQG 600 AGSARTVPLN FYGYPLRLGE RECAYYMRTG KCKFGLTCKF HHPEPTVLPA PFIQPPYGSV 660 LISTGVVSVQ GWSPYPPTAN PLLSPGGQHG VQTGSLFSSS NPLSLSASAF PRPNTEVPSS 720 TGLPLHPVNE GSSIVGNATV G*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MFFPGSNNSQ DTSGVVLVPT RFVWPYGGRR VFVSGTFTRW SEPVLMSPVE GCPNVFQAIC  60
GVTPGFHQYK FYVDGEWRHD ERQPHVTGNY GIVNTLLLTR ELDPVPPSLG TDTHENRMNM  120
DVENDVFQCA VALSGGATQE ATMAISEADV EISCHRISEF LSTYTAYELL PDSGKVIALD  180
VNLPVKQAFH ILYEQGIPVA PLWDSYKKQF VGVLSPLDFI LILRELGNHG SNLTQEELET  240
HTISAWKEGR QLLYGQVDEH GRPIEKRLVH AGAYDSLKDV AVKILQNGVA TVPIIHSPFR  300
DGSFPQLLHI ASLSGILTCI CRHFRHTSNS LPILQQPICT IPLGTWVPRL GETNGRPLAM  360
LRPNASLGSA LALLVQAQVS SIPIVDDNDS LLDTYSRSDI TALAKDRVYA QIRLDEMSVH  420
QAIQLRQDSS SPNGFFDGQR CQMCLRTDHL LKVIERLANP GVRRVIIVEA GSKRVEGIVS  480
LSDVFRPQLL GPGLSKEKAT RESMWQMRLE PISPGYPKRP YEPNCSYYMR TGYCGYGDRC  540
RFHHPRDRSV CVDFRQVFGG GRMGSGDYPE RVGQPACKYF LKTGICKYGS SCKYDHPRQG  600
AGSARTVPLN FYGYPLRLGE RECAYYMRTG KCKFGLTCKF HHPEPTVLPA PFIQPPYGSV  660
LISTGVVSVQ GWSPYPPTAN PLLSPGGQHG VQTGSLFSSS NPLSLSASAF PRPNTEVPSS  720
TGLPLHPVNE GSSIVGNATV G*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-62	C3H family protein