PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.101
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 265aa    MW: 29967.6 Da    PI: 8.7679
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.101genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-151360148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT +Ed+ l d++  +G g+W++ +   g++R++k+c++rw++yl
  evm.model.AsparagusV1_08.101 13 RGAWTSQEDKVLSDYISAHGLGRWRSLPMNAGLNRCGKSCRLRWLNYL 60
                                  89********************************************97 PP
2Myb_DNA-binding59.57.2e-1966111148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+ T+eE+el+v+++k+lG++ W++Ia +++ gRt++++k++w++yl
  evm.model.AsparagusV1_08.101  66 RGNITEEEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 111
                                   7999******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MKRGRRPEGG LKRGAWTSQE DKVLSDYISA HGLGRWRSLP MNAGLNRCGK SCRLRWLNYL  60
RPDIKRGNIT EEEEELIVRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNTY LRKKVTGEAS  120
EKKNTADDDP VAKKKEKSDG NVIRTRATRC TRPILTDQVR KPITSNDASD GLVPTALAPD  180
FQDFNGHTEY PLLNGKEDGS WINVDVMQNL IFSQVPRDSS NASTESLQSI ADAEISFDEE  240
NYARELYSLL DTDSWDSLVV SRRA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-59MYB family protein