PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.940

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 675aa MW: 76123 Da PI: 6.1351

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.940	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.1	1.9e-36	3	79	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+ e+k yhrrh+vC +++ap+v+++g+ +r+CqqC++fh+l +fDe+krsCrr+L++hn+rrr++ evm.model.AsparagusV1_07.940 3 RCQVPGCEVDIRELKGYHRRHRVCLRCANAPSVVIEGEDRRYCQQCGKFHTLPDFDEGKRSCRRKLERHNRRRRRRP 79 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence
MVRCQVPGCE VDIRELKGYH RRHRVCLRCA NAPSVVIEGE DRRYCQQCGK FHTLPDFDEG 60 KRSCRRKLER HNRRRRRRPA DLVSTENEKG PQADLSAETT YDEESKEEND FGCETVLSSK 120 VNDREVLLES DDGHVSPICS LPNSQNMQSN GINSFAVPGE AHIEEEKDNS RSGLSSSICD 180 NRTAYSSVCP TGRISFKLYD WNPAEFPRRL RHQIFQWLAS MPVELEGYVR PGCTILTIFI 240 AMPQFMWEKI SEDAALYIKD LINAPESLLL GRGNIFIFLS NMIIQVLKDG SSLMNIKMEV 300 RAPRIHYVHP SYFEAGKPIE FVVCGSNLNQ PKFRFLVSFV GKYVVFDSCC PISHGKILPY 360 DGNENSCQES DHEMFRIRIG QTNSRIFGPA FIEVENESGI SNFIPILIGN KHICSELGRM 420 QAVLNGSLVE SVTSQIDISC PNPSYCELFV AKQTAISELL LDIGWLLKEP CKGASEAVSN 480 STNLQRLTCL LKISVENELV NVLEVIMNYL DVMIGTAGIQ DSECIMPEDD LQLLQGYVDR 540 AKEIINQRAL HYARSGVDTN WMQRDSMPLS CSVSAKIQDG EANNGDCSCS NENIPFMDKS 600 MGNRKYRYAN QPIDWHQKFW TDSFPCTITG TRLVLFATVS VVMCLSACVM LLHPIKPGDI 660 AVSIRRCLFR YPFP*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence

MVRCQVPGCE VDIRELKGYH RRHRVCLRCA NAPSVVIEGE DRRYCQQCGK FHTLPDFDEG  60
KRSCRRKLER HNRRRRRRPA DLVSTENEKG PQADLSAETT YDEESKEEND FGCETVLSSK  120
VNDREVLLES DDGHVSPICS LPNSQNMQSN GINSFAVPGE AHIEEEKDNS RSGLSSSICD  180
NRTAYSSVCP TGRISFKLYD WNPAEFPRRL RHQIFQWLAS MPVELEGYVR PGCTILTIFI  240
AMPQFMWEKI SEDAALYIKD LINAPESLLL GRGNIFIFLS NMIIQVLKDG SSLMNIKMEV  300
RAPRIHYVHP SYFEAGKPIE FVVCGSNLNQ PKFRFLVSFV GKYVVFDSCC PISHGKILPY  360
DGNENSCQES DHEMFRIRIG QTNSRIFGPA FIEVENESGI SNFIPILIGN KHICSELGRM  420
QAVLNGSLVE SVTSQIDISC PNPSYCELFV AKQTAISELL LDIGWLLKEP CKGASEAVSN  480
STNLQRLTCL LKISVENELV NVLEVIMNYL DVMIGTAGIQ DSECIMPEDD LQLLQGYVDR  540
AKEIINQRAL HYARSGVDTN WMQRDSMPLS CSVSAKIQDG EANNGDCSCS NENIPFMDKS  600
MGNRKYRYAN QPIDWHQKFW TDSFPCTITG TRLVLFATVS VVMCLSACVM LLHPIKPGDI  660
AVSIRRCLFR YPFP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	79	KRSCRRKLERHNRRRRRRP
2	65	77	RRKLERHNRRRRR
3	70	78	RHNRRRRRR
4	73	78	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-155	SBP family protein