![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_07.380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23168.2 Da PI: 4.6438 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.4 | 1.1e-42 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i evm.model.AsparagusV1_07.380 39 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPENQRADAVSSMVYEANARIRDPVYGCAGAIC 119 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+a+la++++e evm.model.AsparagusV1_07.380 120 QLQKQVNELQADLARAQAE 138 **************99987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence |
MESSLDTTIT TTTFNCNSSS SGSPSPTSSP PPPSIVVSPC AACKILRRRC VDKCVLAPYF 60 PPTEPLKFTT AHRVFGASNI IKFLQELPEN QRADAVSSMV YEANARIRDP VYGCAGAICQ 120 LQKQVNELQA DLARAQAELI NMQTQHANLV ALICMEMANS QQNHQQLQNC APPSSINNPM 180 DCSPQSFLVE PESFFLDESN QGCLWEEPLW T* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-68 | LBD family protein |