PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_07.3503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26847.8 Da PI: 10.7113 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 52 | 73 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C + + G+C+yG++C+FaHg+ evm.model.AsparagusV1_07.3503 52 CWSWKELGQCRYGSKCQFAHGK 73 77899***************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence |
MVVRRMGVDW TGFCSDVEAE LLEGIISAGV SVFAARTSPE VAVRRGLQED MCWSWKELGQ 60 CRYGSKCQFA HGKEELRSDP RGPRSWKHKN EVARSVSSTK SSPSSGSSSA YGSKYYRYIS 120 LPSPNTPDPD LPTRTSLTKL AETAAASTIN PKSKLETAAP TQNPSLSPPL QSLSQFHRRH 180 YHRRLPSIGL RLKKKKSSLC AFSMGLALRA GCLSSRRYAL SWRFFFVLQL INKEKKKTSL 240 S* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-08 | C3H family protein |