PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.3403

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-YA

Protein Properties

Length: 350aa MW: 39248.1 Da PI: 9.6673

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.3403	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.9	1.2e-31	152	206	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+RgsgGrF evm.model.AsparagusV1_07.3403 152 PIYVNAKQYHGIVRRRQARAKAEMENKL-IKIRKPYLHESRHRHAMRRQRGSGGRF 206 9*************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MQTAICFKPT GGIGQFSVPQ QSPATLAPWW IGNRSFYGES CGQSKLFTGA IDTRSGQEQN 60 ILEKEGGDTA RFSIIQDNKV SGKDEKVQQH PAALSPQSPF EYQGHFELGL GRNMACSNYP 120 YFDQCYGLYA TYGAQAAHGR MLLPLNITAN VPIYVNAKQY HGIVRRRQAR AKAEMENKLI 180 KIRKPYLHES RHRHAMRRQR GSGGRFLNTK KDGKAQCANT ADSGNLNSTS SGWSINGSEV 240 TSICFQNDSD HLNTSYHVLI DHSSYREARE MKARLWRACG GDRYIGEFEY VDDHRAGKVV 300 VELNGRLNKC GVISPRLTWF GHSVDDICRD YGSWRRRKNV GGKVLGFFY*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MQTAICFKPT GGIGQFSVPQ QSPATLAPWW IGNRSFYGES CGQSKLFTGA IDTRSGQEQN  60
ILEKEGGDTA RFSIIQDNKV SGKDEKVQQH PAALSPQSPF EYQGHFELGL GRNMACSNYP  120
YFDQCYGLYA TYGAQAAHGR MLLPLNITAN VPIYVNAKQY HGIVRRRQAR AKAEMENKLI  180
KIRKPYLHES RHRHAMRRQR GSGGRFLNTK KDGKAQCANT ADSGNLNSTS SGWSINGSEV  240
TSICFQNDSD HLNTSYHVLI DHSSYREARE MKARLWRACG GDRYIGEFEY VDDHRAGKVV  300
VELNGRLNKC GVISPRLTWF GHSVDDICRD YGSWRRRKNV GGKVLGFFY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	200	RHRHAMRRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	7e-41	NF-YA family protein