PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2176
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 122aa    MW: 12879.9 Da    PI: 9.2246
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2176genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC113.31.2e-35221011997
                          NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                                    h+lPlarikki+k + edvkmis eaP+++skacelfi e+t+rsw+ + + krrtl+k d+aaav+ td+fdflv++v 
  evm.model.AsparagusV1_07.2176  22 HSLPLARIKKIMKrSGEDVKMISGEAPIVFSKACELFIEEITVRSWMVTLQGKRRTLHKEDVAAAVAATDVFDFLVEMVG 101
                                    99**********94569***********************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MRQAGAYSGI LSGGISGRTG PHSLPLARIK KIMKRSGEDV KMISGEAPIV FSKACELFIE  60
EITVRSWMVT LQGKRRTLHK EDVAAAVAAT DVFDFLVEMV GSKGGVNGGG ESSEIVVKLE  120
S*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-24NF-YC family protein