PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.1651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | SRS | ||||||||
Protein Properties | Length: 160aa MW: 16588.7 Da PI: 4.3819 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 80 | 6.2e-25 | 11 | 64 | 102 | 154 |
DUF702 102 tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++slP +v+++avf+cvrv+sv+d ge+e+aYq+ v+igGhvfkG+LydqG +e evm.model.AsparagusV1_07.1651 11 KESLPGHVRAPAVFKCVRVTSVEDdGEDEYAYQAMVKIGGHVFKGFLYDQGSDE 64 467*******************9879*************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MSCFLKDASF KESLPGHVRA PAVFKCVRVT SVEDDGEDEY AYQAMVKIGG HVFKGFLYDQ 60 GSDEGAGVDN SNNNANNNSN AIPNISELHL GGGSGAGAGG RSMVPATDMS SLLGDLDLTS 120 GTVYEVIGPL MMPPPLPLPS AAAPRQLCFS LTGLFSFTL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 5e-24 | SRS family protein |