PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.1163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 137aa MW: 14877.7 Da PI: 8.7255 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.4e-09 | 55 | 75 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f rtG CkyGd+Ck+ H+ evm.model.AsparagusV1_07.1163 55 CHHFVRTGNCKYGDSCKYFHP 75 ******************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence |
MPLGKYYCDY CDKQFQDTHF ARKRHLSGSQ HQRARAQWYD SFKGPHGGPL QLGVCHHFVR 60 TGNCKYGDSC KYFHPVQTAV NTTPTLSGPG SLGANPFVGV GSVSGDQTGV SWGNLPPSLR 120 PPPEGGYPPL PFLDWG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 6e-25 | C3H family protein |