PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.957

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 735aa MW: 83740.1 Da PI: 6.9622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.957	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.3e-21	85	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 ++Y ++A++ GFsvr+++sk + ++ ++kr++vC + g + ++k++++k++r+r+ +r++C+a++++kk+ ++w evm.model.AsparagusV1_06.957 85 EYYATFARNNGFSVRRERSKGNpEHPMGVYKRELVCHRAGPPLPRKTEDVKRQRNRKASRCKCEAQMVIKKNVtsgVARWS 165 69***************999767777***************************************99767789 PP FAR1 78 vtkleleHnHela 90 v ++++ HnHel+ evm.model.AsparagusV1_06.957 166 VVNFNNVHNHELM 178 ***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MLQTSERMPT SSNGNLARKQ PCPCGEDACD IDIEGNEEHH TPTQASVNSE PNFVLNRTPP 60 SVDSSLVVPP PYVGQSFQSD DEALEYYATF ARNNGFSVRR ERSKGNPEHP MGVYKRELVC 120 HRAGPPLPRK TEDVKRQRNR KASRCKCEAQ MVIKKNVTSG VARWSVVNFN NVHNHELMDS 180 NDVRYPPSYK NISGVDRDRI LALAKNGCSE SVIMRALEME KGVRQGQLAF TERDMRNFLQ 240 ASKSINREGE GSELLKVCRS VKEKNPDFRY EYTLDENNKL EHVAWSYVTS IRAFKMFGDV 300 VVFDTSYHLN AYDRPVAAWL GIDNHGHTIF FGCVILLDEK PESISWAIQA FVRLMDGNTP 360 QTILTDIDMR LKDAIFNELP NTKHAYPMVH LMSKLPSWFS TPLDSQYDRF KLAFEKLYEF 420 ESVEEFEHGW VEIVNEFALG FDRHINLLYS LRNCWALPYL QGWFFGGLLT NGHSISFKSF 480 FKGFLDSQTR LKDFVEQVGV AVDFQNQAEE EATTRQNQKD IVMKTFMPIE EHASTILTHY 540 AFEMFQKEIM ASTELAVYET TAPQNYLVRH YLKPEGGCIV CCVPSDEELQ CSCKGFESLG 600 ILCKHTVRVL SLKNGFLVPE RYLLTRWRRD SSLFPKSNGQ KYRSQALRSL ASIIIQESAV 660 TKDRFDYVEW HLSRLLNHVR GMPSVDEAAA SDLEVSSSFG DPVDIVTAPS ITRGRPRKAR 720 AALNKVPKEM QGLI*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MLQTSERMPT SSNGNLARKQ PCPCGEDACD IDIEGNEEHH TPTQASVNSE PNFVLNRTPP  60
SVDSSLVVPP PYVGQSFQSD DEALEYYATF ARNNGFSVRR ERSKGNPEHP MGVYKRELVC  120
HRAGPPLPRK TEDVKRQRNR KASRCKCEAQ MVIKKNVTSG VARWSVVNFN NVHNHELMDS  180
NDVRYPPSYK NISGVDRDRI LALAKNGCSE SVIMRALEME KGVRQGQLAF TERDMRNFLQ  240
ASKSINREGE GSELLKVCRS VKEKNPDFRY EYTLDENNKL EHVAWSYVTS IRAFKMFGDV  300
VVFDTSYHLN AYDRPVAAWL GIDNHGHTIF FGCVILLDEK PESISWAIQA FVRLMDGNTP  360
QTILTDIDMR LKDAIFNELP NTKHAYPMVH LMSKLPSWFS TPLDSQYDRF KLAFEKLYEF  420
ESVEEFEHGW VEIVNEFALG FDRHINLLYS LRNCWALPYL QGWFFGGLLT NGHSISFKSF  480
FKGFLDSQTR LKDFVEQVGV AVDFQNQAEE EATTRQNQKD IVMKTFMPIE EHASTILTHY  540
AFEMFQKEIM ASTELAVYET TAPQNYLVRH YLKPEGGCIV CCVPSDEELQ CSCKGFESLG  600
ILCKHTVRVL SLKNGFLVPE RYLLTRWRRD SSLFPKSNGQ KYRSQALRSL ASIIIQESAV  660
TKDRFDYVEW HLSRLLNHVR GMPSVDEAAA SDLEVSSSFG DPVDIVTAPS ITRGRPRKAR  720
AALNKVPKEM QGLI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	KRQRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein