PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.899
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 266aa    MW: 29779.9 Da    PI: 9.013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.899genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-074973126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  +kt+lC +f   G C  G +C+FaHg
  evm.model.AsparagusV1_06.899 49 FKTRLCLRFTS-GNCANGLNCTFAHG 73
                                  69*******99.*************8 PP
2zf-CCCH25.52.4e-08102126226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   k ++C+ f+r+  C yG++C+FaH+
  evm.model.AsparagusV1_06.899 102 KNRICKMFYRGDVCTYGEKCTFAHV 126
                                   6689******55************7 PP
3zf-CCCH33.19.5e-11170195126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +kt+ C+ +   G+C++G+ C+FaHg
  evm.model.AsparagusV1_06.899 170 WKTRMCNKWEVLGYCPFGEGCHFAHG 195
                                   8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDAQIRSQRS EDAIVIPTQR EFKQPISKKP RNSETPPSDR PKRPNCLFFK TRLCLRFTSG  60
NCANGLNCTF AHGSQELRAP LPSWQEFVPE GGSMNQEQLV LKNRICKMFY RGDVCTYGEK  120
CTFAHVEPGM LGDNVNSSKR DSSALEPGKD LEGIVVLGSG SGSVRKQTFW KTRMCNKWEV  180
LGYCPFGEGC HFAHGLAELM DFKNQKELDN PNTTAATLKP PLHQAKLVSS STTSSVKHQS  240
RGFLKWKGLE KISRIYGDWI DDIPF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-38C3H family protein