PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.220

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 446aa MW: 50100.1 Da PI: 4.9854

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.220	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.5e-17	115	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY++YA ++GF v ++ks+ + + g + + +vC++ gk + ++ ++r++ +t+C a+++ k++ dg +++++ evm.model.AsparagusV1_06.220 115 NFYKRYALRIGFGVAVKKSSFN-TYGLCRRLVLVCTRGGKGRANECY-----QSRPTAKTDCPATVVAKLWGDGLLHLMEV 189 6**************99998.7888************9999.....99*********************** PP FAR1 82 eleHnHela 90 +leHnH+l+ evm.model.AsparagusV1_06.220 190 NLEHNHPLN 198 *****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MTSQDIVDNS AMEEKLDEEN ESIAMKNDVR MDECSSEDGL NPPIEDDGVS QSVPVDSISE 60 ELVNDDRDVS AVEGSDNGDV QKGKVELEND VKQNVGDGRT PQTGMIFKSY EEVVNFYKRY 120 ALRIGFGVAV KKSSFNTYGL CRRLVLVCTR GGKGRANECY QSRPTAKTDC PATVVAKLWG 180 DGLLHLMEVN LEHNHPLNQV YEVPSQYILD RWRRDFKQLH ILAHRAKDVL GNTILERYDN 240 LSLRYLQLVE IGAMSDEKFQ LALRLIKEME MSLLDDNTFR DLKSRLLVPD RSNGSDELTQ 300 MGFFEGSRTP SVPAKRRGRP PKKLKESNIE TLSTSVNNKD TSTSLLVGSQ NDTLQTVSTI 360 SQLGSHIRMP GGVDLMEEVN PNELSFGNQF GVHPNPQHHV GNQSVIQPSN TIQFGQQPVG 420 NQSRMQWFYQ EMLQEDQTPY VRRPG*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MTSQDIVDNS AMEEKLDEEN ESIAMKNDVR MDECSSEDGL NPPIEDDGVS QSVPVDSISE  60
ELVNDDRDVS AVEGSDNGDV QKGKVELEND VKQNVGDGRT PQTGMIFKSY EEVVNFYKRY  120
ALRIGFGVAV KKSSFNTYGL CRRLVLVCTR GGKGRANECY QSRPTAKTDC PATVVAKLWG  180
DGLLHLMEVN LEHNHPLNQV YEVPSQYILD RWRRDFKQLH ILAHRAKDVL GNTILERYDN  240
LSLRYLQLVE IGAMSDEKFQ LALRLIKEME MSLLDDNTFR DLKSRLLVPD RSNGSDELTQ  300
MGFFEGSRTP SVPAKRRGRP PKKLKESNIE TLSTSVNNKD TSTSLLVGSQ NDTLQTVSTI  360
SQLGSHIRMP GGVDLMEEVN PNELSFGNQF GVHPNPQHHV GNQSVIQPSN TIQFGQQPVG  420
NQSRMQWFYQ EMLQEDQTPY VRRPG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-12	FAR1 family protein