PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.198

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 644aa MW: 71612.6 Da PI: 7.6118

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.198	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	7	27	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa+ G C++G+ C+F H evm.model.AsparagusV1_06.198 7 VPCRDFAA-GRCQRGSDCRFLH 27 69****.*********** PP
2	zf-CCCH	22.8	1.6e-07	75	98	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +C +f+ G C++G+ C++aH evm.model.AsparagusV1_06.198 75 RTTRCYDFMM-GRCRRGSECRYAHH 98 6899****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MGSGHPVPCR DFAAGRCQRG SDCRFLHEDS SRRQPNRYYD SGISDGRESR AERGRINVRE 60 PQNYPRDRFS RSDSRTTRCY DFMMGRCRRG SECRYAHHEA SHDRERDVRD EPRARTHDRR 120 DDERLDPPHR PVTDTPCKFF AEGCCRRGEG CRFSHHGVEA HDDTSYSMDI DVRNSSRNNR 180 NQEDHSAVIE ITKSSKWMGN DNCSKVEDSK SKPQHSQTQF TASNIHQNQP QKASNPLPVA 240 SIPGQNLGQV GQNQYSSGQP IQAQGFIPNV PFQQLLPPMP LNVQMQQAAF STPQNVQGGQ 300 FIVPQAPPNF SVPMQNLPVL PPSNITMGQQ NYNLPLPPHT GQNQQNFNLI GQIQQNLPLA 360 PLSGRNQLNL NFSGQNQHVA SQSLSPENFN SNEQLIKRAD TSEQPSQLNS DASITQKVVT 420 SEQAAQITNL SASLAHFFGG TGGLKPQIST GMLPLVQPNQ GSFTNPISGN MELVDQDTSN 480 LPADVEQKGH AVEEGVTNTN STIPPIKSVD VEIEVMQGIV DTAAKEVNEA EAVHNKKERV 540 DDIEAEVQKD GESKQSKEAK GMRMFKCALV EFVKEVLKPS WKEGHLSKEA HKTIVKKAVE 600 KVTGAMQSQN IPQTQEKIDI YLAHSKAKLT KLVQAYVDKY VKG*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MGSGHPVPCR DFAAGRCQRG SDCRFLHEDS SRRQPNRYYD SGISDGRESR AERGRINVRE  60
PQNYPRDRFS RSDSRTTRCY DFMMGRCRRG SECRYAHHEA SHDRERDVRD EPRARTHDRR  120
DDERLDPPHR PVTDTPCKFF AEGCCRRGEG CRFSHHGVEA HDDTSYSMDI DVRNSSRNNR  180
NQEDHSAVIE ITKSSKWMGN DNCSKVEDSK SKPQHSQTQF TASNIHQNQP QKASNPLPVA  240
SIPGQNLGQV GQNQYSSGQP IQAQGFIPNV PFQQLLPPMP LNVQMQQAAF STPQNVQGGQ  300
FIVPQAPPNF SVPMQNLPVL PPSNITMGQQ NYNLPLPPHT GQNQQNFNLI GQIQQNLPLA  360
PLSGRNQLNL NFSGQNQHVA SQSLSPENFN SNEQLIKRAD TSEQPSQLNS DASITQKVVT  420
SEQAAQITNL SASLAHFFGG TGGLKPQIST GMLPLVQPNQ GSFTNPISGN MELVDQDTSN  480
LPADVEQKGH AVEEGVTNTN STIPPIKSVD VEIEVMQGIV DTAAKEVNEA EAVHNKKERV  540
DDIEAEVQKD GESKQSKEAK GMRMFKCALV EFVKEVLKPS WKEGHLSKEA HKTIVKKAVE  600
KVTGAMQSQN IPQTQEKIDI YLAHSKAKLT KLVQAYVDKY VKG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-23	C3H family protein