PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.1243
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family B3
Protein Properties Length: 438aa    MW: 49503.9 Da    PI: 8.4765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.1243genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14338427198
                                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                    f+  +  s+v+   +++lp +f++e+   ++++ +++l de+g ++ v++   +++    +++GW++F+ a++L+ gD++
  evm.model.AsparagusV1_06.1243 338 FIRSMAMSHVSGGFWFCLPANFCKEYL--PANDLKMILVDERGFEYVVNY--FGSKT--AFSGGWRGFALAHKLEFGDTL 411
                                    5666777999999*************4..345678***************..77764..499****************** PP

                                    EEEE-SSSEE..EEEEE- CS
                             B3  81 vFkldgrsefelvvkvfr 98 
                                    +F+l++  +f  +v +++
  evm.model.AsparagusV1_06.1243 412 IFELHEPARF--KVYIIK 427
                                    ***8654555..888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MGDEGPCAGL RAQITELECK LSQSELSNFV ASQEIENLRR VSLMHRETLA RLQEDNKILR  60
ERELRDQETI EGLLGEIEKK ERDSREKLLE LEREKKRAQD EAFEWKNNHS GASKFIDEIV  120
AGFERKEREF REMVLMVAGQ KKEGIESQAL RGSEENCALD GKGKGEEIFH VKEKEKGHGS  180
ETDYDDEVPL SHFARKRLAG GSHSSKQCLV SPKPWEFASN GGKRTSSGEE NVRIPSGSAM  240
GEQKERQKVP RPRKKPKLTD LHCSASARNP GSAGFSGVLD GVIRRYRKSM GDRHSIRDFN  300
NQKCRAYTGR TPSPEQRENA VKRALTFCKS LRSCNPSFIR SMAMSHVSGG FWFCLPANFC  360
KEYLPANDLK MILVDERGFE YVVNYFGSKT AFSGGWRGFA LAHKLEFGDT LIFELHEPAR  420
FKVYIIKANP QAPCEDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244255KERQKVPRPRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-34B3 family protein