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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | evm.model.AsparagusV1_05.742 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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| Family | HSF | ||||||||
| Protein Properties | Length: 265aa MW: 30397.3 Da PI: 4.9981 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 108.6 | 4.6e-34 | 17 | 109 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82
F+ k+y++++d++++ l++w +++nsfvvld+ +f+ +Lp yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+
evm.model.AsparagusV1_05.742 17 FVAKTYQMVSDPRTDGLVRWGRENNSFVVLDPADFSLFLLPAYFKHSNFSSFVRQLNTYGFRKVDPDH---------WEFA 88
9********************999******************************************99.........**** PP
ESXXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103
h+sF +g+++ll i r+k++
evm.model.AsparagusV1_05.742 89 HESFLRGQTHLLPLIVRRKKK 109
*****************9987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 265 aa Download sequence |
MDSNNSSPNV EVQVAPFVAK TYQMVSDPRT DGLVRWGREN NSFVVLDPAD FSLFLLPAYF 60 KHSNFSSFVR QLNTYGFRKV DPDHWEFAHE SFLRGQTHLL PLIVRRKKKK DEICDKKPGV 120 EDDEEDHEET LLKEVGQLRR EQRALEDELE GMNKRLQVTE QRPHQMISFL VKVAQDPDLL 180 PRLILSKKEQ NQETKKRRLL SDSIHSLPPL PPSFDDSSAN EMDSMSIEDQ IGSEKDQVVL 240 LPEFGGPETD TVAYPFSLLG HVFF* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 105 | 110 | RRKKKK |
| 2 | 105 | 111 | RRKKKKD |
| 3 | 106 | 112 | RRKKKKD |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G24520.1 | 1e-67 | HSF family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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