PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.721
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 396aa    MW: 43251.5 Da    PI: 8.2523
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.721genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-10427226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  ++e Cr+f+r G C yGdrC+F H+
  evm.model.AsparagusV1_05.721  4 RREACRNFQR-GSCDYGDRCRFLHV 27
                                  689*******.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MSRRREACRN FQRGSCDYGD RCRFLHVSQQ QSRPNSFGFG SQNNSSQFFN ANQQQKPNPF  60
GFGVQNGSGP KGTPSFGVRN DSPAKPFENK WIRPSSTSAP NYSQQASTQP QAPNHQCSDP  120
ESCKHQIAED FKNELPLWRL TCYGHWKNRA CDIVGDVSYE ELRAAAYEDA KKGLPLQAII  180
DRERNLYNSK CAEFDNLLRN PYVISSNYAE TKNFAGANNT MPSMCVQNNA PAQSNAPPLF  240
SSFSQMGASS TVGPNLRPTT SATPPNSIFG QPNVPQYNNQ NAGGNRMKFG NSGSFTNQPS  300
TLPSGTSPFP NSTNFQNGFM APGSNPISSA LVQTPFANST QWSSSPDAPR VTTGTVHQES  360
ALDKQEDGAD DSIWLKNEWA VGEIPMVAPP ARFCT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-75C3H family protein