PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.679

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 455aa MW: 49767.3 Da PI: 8.9155

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.679	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.7	4.5e-40	153	228	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dl+ ak+yhr+h+vCe hsk+p+v+++g+e+rfCqqCsrfhelsefD +krsCrrrL++hn+rrrk+ evm.model.AsparagusV1_05.679 153 RCQVEGCNIDLTGAKDYHRKHRVCESHSKCPKVIIAGQERRFCQQCSRFHELSEFDLKKRSCRRRLSDHNARRRKP 228 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MDWNVKSPLQ WDWENAAIGT GSVYSSAGGA FSSSDLGNGS SRSSISASID SSLKAGVKIS 60 EFNFENVEGS SPKGLSKNKE LARMEDTGTS PVVAAKGGLG EPLIGLKLGK RTYFEDVCAG 120 NSTKTSTAST SVAPVTAIVK KTRVSHQSVP NSRCQVEGCN IDLTGAKDYH RKHRVCESHS 180 KCPKVIIAGQ ERRFCQQCSR FHELSEFDLK KRSCRRRLSD HNARRRKPLS DTISFNSSRL 240 ASSFYDGRQQ MNFVLNRSPF GNMRPTASST WEDSCGFSLT HSRGSWIKSM KTRGMDGHLH 300 FSNYDLSNTV SSLPQGLDKL MPLKGTTTEV LSQGLGAPVP DPNLDGGPDL RRALSLLSTD 360 SWGSVNPGQS NLSHYVNASH NSSSHPTMQQ AVNTSTYWQD QQSLHQQERV VPFDLHNNGS 420 QYQELQLPKA PYETSFFDSG QILSKSDGHF LELT*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MDWNVKSPLQ WDWENAAIGT GSVYSSAGGA FSSSDLGNGS SRSSISASID SSLKAGVKIS  60
EFNFENVEGS SPKGLSKNKE LARMEDTGTS PVVAAKGGLG EPLIGLKLGK RTYFEDVCAG  120
NSTKTSTAST SVAPVTAIVK KTRVSHQSVP NSRCQVEGCN IDLTGAKDYH RKHRVCESHS  180
KCPKVIIAGQ ERRFCQQCSR FHELSEFDLK KRSCRRRLSD HNARRRKPLS DTISFNSSRL  240
ASSFYDGRQQ MNFVLNRSPF GNMRPTASST WEDSCGFSLT HSRGSWIKSM KTRGMDGHLH  300
FSNYDLSNTV SSLPQGLDKL MPLKGTTTEV LSQGLGAPVP DPNLDGGPDL RRALSLLSTD  360
SWGSVNPGQS NLSHYVNASH NSSSHPTMQQ AVNTSTYWQD QQSLHQQERV VPFDLHNNGS  420
QYQELQLPKA PYETSFFDSG QILSKSDGHF LELT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	227	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	8e-57	SBP family protein