PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.3527
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GATA
Protein Properties Length: 301aa    MW: 32168.7 Da    PI: 6.9013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.3527genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-17211246134
                           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                    C++Cgt+   Tp++Rrgpdg++tLCnaCGl ++ kg
  evm.model.AsparagusV1_05.3527 211 CHHCGTSAksTPMMRRGPDGPRTLCNACGLVWANKG 246
                                    *******999***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MSENPNPNSA TEVKPAPVVN MYTEAENHQI LAGDCHMVGG GSGGEGLEEE QESDGFEGDG  60
LSDPGNNLHG DPQAAIGPHL GSNQLTLSFQ GEVYVFDSVS PEKVQAVLLL LGGRELSTPY  120
PSSSHVNSKR SNLPHRVASL MRFREKRKER NFDKKIRYTV RKEVAQRMQR SRGQFISSKS  180
KPEDGSVGDT SCDDTRNWAS ADKQPPAAAT CHHCGTSAKS TPMMRRGPDG PRTLCNACGL  240
VWANKGIMRD LSKSPVPISN PLAEVRAGNV HLLPSVQDNS AEAGAVQPGH ISANGHNDPS  300
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-74GATA family protein