PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.3259
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 980aa    MW: 107651 Da    PI: 8.3956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.3259genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-1672121155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm.model.AsparagusV1_05.3259  72 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 121
                                    78*******************......55************************997 PP
2AP241.72.8e-13164214155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  evm.model.AsparagusV1_05.3259 164 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 214
                                    89********.7******5553..2.26**********99**********99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    
MWDLNGSPKR MGDPVTFQFF PVSEPAEDGI QGGEITAVAP RAHWAGVKFV EKAADVSPAV  60
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR  120
GVEADINFTL SDYEDDLKQM ANLTKEEFVH VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR  180
MGQFLGKKYV YLGLFDTEVE AARAYDKAAI KCNGKDAVTN FDPSIYESEL SCNGSQSDHN  240
LELSLGSLSS KRTSVEPMDE EGSVGMDQRA PMDEFDWKRN TRPKFPSNND ISVTGGGGLS  300
LSIGSEQTPL SSKLLAANTA ASSGFPPQHR SKAQKQIGRE RDSGGHAGVD GGNQFPSTSL  360
YVGDLEPNVT DAQLYDMFSQ IGQVVSVRVC RDITTRRSLG YAYVNYSNPM DAARALDMLN  420
FTPLNGKPIR IMYSNRDPST RKSGAANIFI KNLDKSIDHK ALYDTFSVFG NILSCKVATE  480
PSGQSKGYGF VQFEQEEAAQ NAIEKLNGMC LNEKVVYVGP FLRKQERENT PDKTVFRNVF  540
VKNLSESTTK EELDQIFGEY GTITSSVVMT EGDGKSKCFG FVNFENPEDA ARAVEELNGK  600
KFGDKEWYVG KAQKKSERER ELKGRFEQGV KEAADKFQGV NLYLKNLDDS IGDEKLRELF  660
SEFGTITSCK VMRDPNGISR GSGFVAFSNP EDASRALAEM NGKMIGSKPL YVAIAQRKED  720
RRARLQAQFS QMRPVSMPPN VAPRMPMYAP GAPGLGQQLY YGQAPPALIP PQPGFGYQQH  780
LVPGMRPGGA PMPNFFVPMM QQGQQPQRPG GRRGGGGPVQ QAQHPGPMLP QQMLPRGGRM  840
YRYPTGRNMP DVQMSGVAGG MLSVPYDMGA MPLRDAQPIP IGTLASALAN ASPEQQRTML  900
GESLYPLVDQ LEHESAAKVT GMLLEMDQTE VLHLLESPEA LKAKVAEAMD VLRTVAQQQQ  960
AGTATDQLAS LSLNDGIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1810817GGRRGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-110AP2 family protein