PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.3196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 49660.1 Da PI: 7.462 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 54 | 77 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++rtG C yG++C+++H+ evm.model.AsparagusV1_05.3196 54 APDCIYYLRTGLCGYGSNCRYNHP 77 589********************9 PP | |||||||
2 | zf-CCCH | 36.5 | 8.1e-12 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ evm.model.AsparagusV1_05.3196 96 QPDCQYFLKTGTCKFGATCKYHHPR 120 789********************96 PP | |||||||
3 | zf-CCCH | 32.1 | 2e-10 | 142 | 165 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ evm.model.AsparagusV1_05.3196 142 KSCPYYMRTGSCKFGFACKFNHPQ 165 66********************97 PP | |||||||
4 | zf-CCCH | 40 | 6.3e-13 | 282 | 307 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+CkyG +Ck++H++ evm.model.AsparagusV1_05.3196 282 DQPECQYYMKTGICKYGTTCKYHHPK 307 689*********************96 PP | |||||||
5 | zf-CCCH | 27.3 | 6.1e-09 | 326 | 351 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ +G C++G+ Ck+ H+ evm.model.AsparagusV1_05.3196 326 PGHPACTSYSLYGSCRFGAACKYDHP 351 57899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
MPDHGEFQNN VVSSSSNGAA PENLEDAIWR LKVEDSKQEG LDGNQNLYPD RPGAPDCIYY 60 LRTGLCGYGS NCRYNHPTYN GQGTQDRAEL PERVGQPDCQ YFLKTGTCKF GATCKYHHPR 120 DRHDVRPASL NILGLPMRQD EKSCPYYMRT GSCKFGFACK FNHPQPATLG PVFPVTPPSA 180 YGPTGSSVAP PSSLPVIGGL SAWPSARPYL TSPRMQGLPA YMPVVLPSSQ GAMSMQQGWT 240 AYTGSASQFP STDSFGPTQV PNPKLHAQSA SSTAINLPER PDQPECQYYM KTGICKYGTT 300 CKYHHPKERW SESPPTLGPL GLPLRPGHPA CTSYSLYGSC RFGAACKYDH PLMGFYNYAM 360 PTYSVPDPSA LFPPNHSNSP QVTWASASEA SFSKTLRLPD RLQKSDEKNN KEANATSHDN 420 NDRVNDPPPT QKTSPSTDNA PSTDSTENTQ NHSD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-89 | C3H family protein |