PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.311

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 170aa MW: 19043.9 Da PI: 4.8668

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.311	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.9	5.4e-36	7	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +q +++f +vhk+FGasnv+kll++lp +r++a+ ++ +eA+ar++dPv+G++++i evm.model.AsparagusV1_05.311 7 SCGACKFLRRKCEENCIFAPYFNYDQaEANFSAVHKIFGASNVSKLLSKLPIYNRSAAAITISFEAQARIQDPVRGCLSHI 87 6*********************99779************************************************ PP DUF260 81 lklqqqleqlkaelall 97 l+lq q+++l++e+++l evm.model.AsparagusV1_05.311 88 LALQYQVACLQEEIESL 104 ***********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MVGVGSSCGA CKFLRRKCEE NCIFAPYFNY DQAEANFSAV HKIFGASNVS KLLSKLPIYN 60 RSAAAITISF EAQARIQDPV RGCLSHILAL QYQVACLQEE IESLMVKMVP RSCSLGTVDE 120 FKPRMQEVEP GYKEVINRLE DCLLNANDEP NSWEELALYL NDLEKDLMH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	4e-48	LBD family protein