PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.2823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 502aa MW: 53524.2 Da PI: 7.9547 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.2e-11 | 137 | 161 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ evm.model.AsparagusV1_05.2823 137 GEKDCAHYMQTRTCKFGEACKFDHP 161 7889********************8 PP | |||||||
2 | zf-CCCH | 29.8 | 1e-09 | 188 | 214 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t Ck+G rCkF+H++ evm.model.AsparagusV1_05.2823 188 PGEPDCPYYMKTQKCKFGFRCKFNHPK 214 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.6 | 8.9e-13 | 243 | 267 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G++CkF+H++ evm.model.AsparagusV1_05.2823 243 EPICSFYSKTGKCKFGANCKFHHPK 267 799********************96 PP | |||||||
4 | zf-CCCH | 36.7 | 7.3e-12 | 316 | 340 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG CkyG++C+F+H+ evm.model.AsparagusV1_05.2823 316 GETDCPFYVKTGSCKYGATCRFNHP 340 6789********************9 PP | |||||||
5 | zf-CCCH | 39.4 | 1e-12 | 403 | 424 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+G+rCkF+H+ evm.model.AsparagusV1_05.2823 403 ACDFYMKTGQCKFGERCKFHHP 424 5********************8 PP | |||||||
6 | zf-CCCH | 41.1 | 3e-13 | 455 | 478 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG +C+F H+p evm.model.AsparagusV1_05.2823 455 VACPFYMKTGTCKYGVTCRFDHPP 478 68********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence |
MAYGGYSSTY GGASSYSSRL SADPYLSSAS RYSNPSAFAS ASEITKYSSS SMDYGSSLYS 60 NQREFGGIGG QSSWAGYDGA GLTSGMKRSA EALYQQNVLG SYNTIGQSDA LFSSNSMFKH 120 PRLETASSLP VYPQRPGEKD CAHYMQTRTC KFGEACKFDH PIWVPEGGIP DWKEVPLVPT 180 TEALPERPGE PDCPYYMKTQ KCKFGFRCKF NHPKDNLNAL TGGGDGMGTG TVDPVLLPER 240 PSEPICSFYS KTGKCKFGAN CKFHHPKDLE IPSSGQNAGA LQQVESAGGD SVPAKTFAPF 300 TPALVHNSKG LPIRPGETDC PFYVKTGSCK YGATCRFNHP DRIAINPPLG GNIGQTVMPS 360 AASLPIGLIN SAANLIPSID PLLAQASLGV SPAVYPQRPG EMACDFYMKT GQCKFGERCK 420 FHHPIDRSAP NASVAQVQPN VKLTLAGLPR REGSVACPFY MKTGTCKYGV TCRFDHPPPG 480 EAIAMATAAQ GSETGVDAEQ N* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |