PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2755
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 274aa    MW: 30969.5 Da    PI: 5.6838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2755genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_05.2755 14 KGLWSPEEDEKLFNHIIRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                                   678*******************************************97 PP
2Myb_DNA-binding48.12.7e-1567111147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    rg +++eE+++++ ++ +lG++ W+ Ia++++ gRt++++k++w++ 
  evm.model.AsparagusV1_05.2755  67 RGTFSQEEEDIIIGLHGLLGNR-WSQIASHLP-GRTDNEIKNFWNSC 111
                                    899*******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRHSCCLKQ KLRKGLWSPE EDEKLFNHII RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDIIIG LHGLLGNRWS QIASHLPGRT DNEIKNFWNS CLKKKLRQRG  120
IDPNTHKPLN DTEPNAEKPP TSDSLPTKQV FDPFPVFEFQ ANLDTNGTIL NSYNQFEQNL  180
SAPDSGFVDY GSVLNFSENC GYGDSSSNSS NWNGLVGSEA LNWTPEIKAE NEKLSPWEGA  240
KENGLGSEDF SGFEMRTVCH DLCENWEFSR DFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-81MYB family protein