PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 223aa MW: 24899.5 Da PI: 6.997 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3e-07 | 166 | 180 | 12 | 26 |
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G+Ck G+rC+F H+ evm.model.AsparagusV1_05.254 166 MGFCKNGSRCRFLHD 180 7*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MNNGGIKVDI LEELDFCSNN LLLGLTMSLG CSRECLKEKI LIETHNIKTP PRRASLAPLQ 60 RMNIVGSENS REKEASERSS WTLSIELAKA SKGEQLPDKI WMKQQLTQQL AIGDNDVTKV 120 LERMSERENF ADNDSIKRPL RKAPLVPPQC YFAISTSLMH DIHRVMGFCK NGSRCRFLHD 180 LNEDKLDAAA RFPYPPGQLA DVPVVAHEPE GGCDDGADAR RR* |