PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.1485

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 314aa MW: 32719.3 Da PI: 9.7634

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.1485	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	107	132	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ evm.model.AsparagusV1_05.1485 107 KTKMCNKYNSAEGCKFGDKCHFAHGE 132 899999999999************96 PP
2	zf-CCCH	36.9	6.3e-12	280	304	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg evm.model.AsparagusV1_05.1485 280 FKTKLCENFAK-GSCTFGDRCHFAHG 304 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MDSFGAGRKR GRPDAANGNG GFAGSKRSKE MDAQSGLGSK SKPCTKFFST AGCPFGEGCH 60 FLHFVPGGYN AVAQMTNMGN PAHALPPRGP MGPSPIPDAH GPPPAVKTKM CNKYNSAEGC 120 KFGDKCHFAH GERELGKPIL PSHDGPMGPP PMGPGRMGGR GMEHPPPPTG MGIPGSFGAS 180 ATAKISVESS LAGAIIGKGG VNTKHICRVT GAKLAIREHE SDANLKNIEL EGSFDQINKA 240 SAMVRELLMS ISASAPMPMK SHQAAVPPQS HHHHHASNNF KTKLCENFAK GSCTFGDRCH 300 FAHGASELRK TAV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	7e-53	C3H family protein