PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.1290

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 380aa MW: 41999.3 Da PI: 7.7593

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.1290	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	45	65	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C+yG+rC++ H+ evm.model.AsparagusV1_05.1290 45 ICTFYQK-GVCSYGSRCRYEHV 65 7****.*********997 PP
2	zf-CCCH	20.6	7.9e-07	152	174	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G+rC+ +Hg evm.model.AsparagusV1_05.1290 152 QPICS-FAAAGSCPHGERCPHIHG 174 68899.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MPSSRFPAGD QPRTKVLCKF FSHGACLKGE HCEFSHDWKD QANNICTFYQ KGVCSYGSRC 60 RYEHVKVSRH QTSASPSSHS RPPVASGSVQ VTSVVSLSGE LRSGFSSPIE QSSLSGSVCP 120 PVEAAWSQKH DAYALPDSID GHYVASSSLA DQPICSFAAA GSCPHGERCP HIHGDLCSIC 180 GKHCLHPYRP DEREDHIRTC KQNSKRLEAL RRSQEIECSV CLDRVLAKPT AGERKFGLLS 240 ECDHPFCISC IRNWRSNSPA SGMDVNSALR ACPICRKLSY FVIPSVIWYS TQEEKQEIVN 300 SYKDKLKSID CKYFDFGNGT CPFGTSCFYK HAYRDGSLEQ VALRHLDAED GNTVIAKDIR 360 LSDFFSRLNI AGAYDSSII*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MPSSRFPAGD QPRTKVLCKF FSHGACLKGE HCEFSHDWKD QANNICTFYQ KGVCSYGSRC  60
RYEHVKVSRH QTSASPSSHS RPPVASGSVQ VTSVVSLSGE LRSGFSSPIE QSSLSGSVCP  120
PVEAAWSQKH DAYALPDSID GHYVASSSLA DQPICSFAAA GSCPHGERCP HIHGDLCSIC  180
GKHCLHPYRP DEREDHIRTC KQNSKRLEAL RRSQEIECSV CLDRVLAKPT AGERKFGLLS  240
ECDHPFCISC IRNWRSNSPA SGMDVNSALR ACPICRKLSY FVIPSVIWYS TQEEKQEIVN  300
SYKDKLKSID CKYFDFGNGT CPFGTSCFYK HAYRDGSLEQ VALRHLDAED GNTVIAKDIR  360
LSDFFSRLNI AGAYDSSII*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-147	C3H family protein