PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.510

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 401aa MW: 45556.4 Da PI: 5.4309

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.510	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.7	2.4e-26	90	171	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k++ k+ s +++y+ evm.model.AsparagusV1_04.510 90 WVQEETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHQCKGS---GSAKMSYY 167 ****************************************************************9984...556899 PP trihelix 83 dqle 86 ++l+ evm.model.AsparagusV1_04.510 168 KELD 171 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MSLFLAIDQL FSSSLLKRRE EDQNPNHLLE ASKAMYLSEK PRPLDFYKEE EEGRDMMIEV 60 VGNGQHPMIL AESSGEDPEI KAPKKRAETW VQEETRSLIG LRREMDGLFN TSKSNKHLWE 120 QISAKMRDKG FDRSPTMCTD KWRNLLKEFK KAKHQCKGSG SAKMSYYKEL DELLKERNKN 180 ATYKSPAAAK VDSFMQFADK GLEDAGIPYT AVEGTGRSPL NLERRLDHEG HPLAITSVDA 240 TASGVPPWNW RDTPTNGGEN QAPYGGRVLL VKWGEYTKKI GVDGTAEAIK EAIKSAFGLR 300 TQRAFWLEDE DEVVRCLDRE MPIGTYSLHL DDGVTIKVCT YVDNAVSTED KTFYTGEDFR 360 DFLSRNNWIS LRELNGFRSV VTLDDLRQGE MYQGVRLLEE *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MSLFLAIDQL FSSSLLKRRE EDQNPNHLLE ASKAMYLSEK PRPLDFYKEE EEGRDMMIEV  60
VGNGQHPMIL AESSGEDPEI KAPKKRAETW VQEETRSLIG LRREMDGLFN TSKSNKHLWE  120
QISAKMRDKG FDRSPTMCTD KWRNLLKEFK KAKHQCKGSG SAKMSYYKEL DELLKERNKN  180
ATYKSPAAAK VDSFMQFADK GLEDAGIPYT AVEGTGRSPL NLERRLDHEG HPLAITSVDA  240
TASGVPPWNW RDTPTNGGEN QAPYGGRVLL VKWGEYTKKI GVDGTAEAIK EAIKSAFGLR  300
TQRAFWLEDE DEVVRCLDRE MPIGTYSLHL DDGVTIKVCT YVDNAVSTED KTFYTGEDFR  360
DFLSRNNWIS LRELNGFRSV VTLDDLRQGE MYQGVRLLEE *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-172	Trihelix family protein