PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.3554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | YABBY | ||||||||
Protein Properties | Length: 222aa MW: 24374.7 Da PI: 7.598 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232.9 | 7.8e-72 | 20 | 183 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 seq+Cyv+C++C+t+lavsvP +slfk+vtvrCGhCt+llsvn++ a + hl++++ + +++l +e evm.model.AsparagusV1_04.3554 20 PSEQLCYVHCTYCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHAFLAPTHHNLLDEIACPPPS 99 68******************************************9999999999999*******9999998877766666 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + ++++++s++ + +ee p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ evm.model.AsparagusV1_04.3554 100 LLVDPANMHNNSMNP-VKGAEEERPQNPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPH 178 666666666666666.5677888999999*************************************************** PP YABBY 166 ihfgl 170 ihfgl evm.model.AsparagusV1_04.3554 179 IHFGL 183 ***97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSSSSAAASF SQLDHFSPPP SEQLCYVHCT YCDTVLAVSV PCSSLFKTVT VRCGHCTNLL 60 SVNMRGLLLP AANQLHLGHA FLAPTHHNLL DEIACPPPSL LVDPANMHNN SMNPVKGAEE 120 ERPQNPVANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI THREAFSAAA KNWAHFPHIH 180 FGLMPDQSLK KNNVRQQEGD DVLLKDGFYT AAANMQGVTP Y* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 6e-84 | YABBY family protein |