PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.2576

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 349aa MW: 39794.6 Da PI: 6.9282

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.2576	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	92	116	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH tH evm.model.AsparagusV1_04.2576 92 YVCHydGCGKKFLDSSKLKRHFLTH 116 9********************9998 PP
2	zf-C2H2	19.9	2e-06	122	146	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++ H evm.model.AsparagusV1_04.2576 122 FICPhpGCGKAFSLDFNLRSHMKIH 146 789********************99 PP
3	zf-C2H2	15.8	4.1e-05	152	176	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dCgk +++ L+ Hi+ H evm.model.AsparagusV1_04.2576 152 HVCPykDCGKKYTHENKLNAHIKAH 176 79*********************96 PP
4	zf-C2H2	13.7	0.00019	216	241	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk + + + L+ H+++ H evm.model.AsparagusV1_04.2576 216 FACPyeGCGKDYIHEYKLNLHLKKeH 241 78*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MRSKAPSAVR WFKDWVPQNL ILSGGECSLL KWVTEDTMQS LKDNQKVPEK QAPEPESTTE 60 VLFLCSYEGC GRTFLDIGTL RKHAHTHGER QYVCHYDGCG KKFLDSSKLK RHFLTHTGER 120 HFICPHPGCG KAFSLDFNLR SHMKIHSPEN YHVCPYKDCG KKYTHENKLN AHIKAHHGKS 180 TGAETVKHST QVLDKIQNAL KNPAALHGSA SSDRPFACPY EGCGKDYIHE YKLNLHLKKE 240 HPDHNLEENG KHHAPTADFD IDESSEQDTL MKKLNVLKSI KRNRPSPIQQ KPPSKVPRQK 300 SSSSAPRDID MVKKSWPIKD MYEEDSEETE EDKEDLENVD DEETEDED*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MRSKAPSAVR WFKDWVPQNL ILSGGECSLL KWVTEDTMQS LKDNQKVPEK QAPEPESTTE  60
VLFLCSYEGC GRTFLDIGTL RKHAHTHGER QYVCHYDGCG KKFLDSSKLK RHFLTHTGER  120
HFICPHPGCG KAFSLDFNLR SHMKIHSPEN YHVCPYKDCG KKYTHENKLN AHIKAHHGKS  180
TGAETVKHST QVLDKIQNAL KNPAALHGSA SSDRPFACPY EGCGKDYIHE YKLNLHLKKE  240
HPDHNLEENG KHHAPTADFD IDESSEQDTL MKKLNVLKSI KRNRPSPIQQ KPPSKVPRQK  300
SSSSAPRDID MVKKSWPIKD MYEEDSEETE EDKEDLENVD DEETEDED*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-118	C2H2 family protein