PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1590
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 267aa    MW: 30817.4 Da    PI: 5.4086
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1590genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.53.2e-171384169
                       trihelix  1 rWtkqevlaLiearremeerlrrg..klkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegek 69
                                   rW++qe+laL+ea++  e + r g  +  +p+W+ +s+++r + g+er+p qC+++w+nl+ ++kki+  e+
  evm.model.AsparagusV1_04.1590 13 RWSRQEILALVEAKQAYEGQRRWGpvRPTEPKWAFISSHCRNHgGVERGPLQCRKRWSNLACDFKKIRGKEE 84
                                   8**************99999997533799***********665268*********************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MSSPIKSSGR LPRWSRQEIL ALVEAKQAYE GQRRWGPVRP TEPKWAFISS HCRNHGGVER  60
GPLQCRKRWS NLACDFKKIR GKEEGYWRMR SGERRERRLP GFFDREVFER MREVKGEVKE  120
EEEEMXXXXF TEEEEEEDDA AAAADDGVMD EPLVVVPISE RKYQPENYAH SDTGNSNDNQ  180
QADNNPEKGQ KRRRTSEAAE EEEQETSFDK KLIKILEKST KLLAANLEAR NLNCQLDRDQ  240
RKDQTESLLA VMTKLADAVG RIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191214KRRRTSEAAEEEEQETSFDKKLIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-39Trihelix family protein