PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.996
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 491aa    MW: 55262.3 Da    PI: 5.3934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.996genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.93.3e-991834782299
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   ++lL++cAea++++  +  ++l ++ ++ +s +g+p+qRl ay++e+L ar  +s++++y+al++ + +   s e l+++k
  evm.model.AsparagusV1_03.996 183 KQLLIKCAEALAENRINDFETLKEETRTFVSINGEPIQRLGAYMLEGLVARRENSGTNIYRALRCHQPE---SNELLSYMK 260
                                   689*****************************************************************9...99******* PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161
                                   ++++++P++kf++++aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + ++l+ +
  evm.model.AsparagusV1_03.996 261 ILYDICPYFKFGYMAANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGDNLQPV 341
                                   ********************************************************************999999******* PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   g+ L+++ +++++p+ef++l      +++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++v
  evm.model.AsparagusV1_03.996 342 GKMLSDMSKKFNIPLEFTPL-PVYGPAVKREMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLV 421
                                   *******************5.88899******************************************************* PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                                   eqe+++n+++Fl+rf+e+l+yysa+f+s++ +lpr+s+eri+vE+++l+++ivnv  
  evm.model.AsparagusV1_03.996 422 EQESNTNTTPFLTRFAETLDYYSAMFESIDDTLPRDSKERISVEQHCLAKDIVNVAI 478
                                   ******************************************************855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MDSHRPLKYG LADPKSSPPP YSTWTVHRMK FDLGNSPNSP LSTHFEPDTL SIPGNSQELQ  60
YSSTETISGH SPSRYSSPLN QSQQVQIRES TQVCSPSPYS VSSQSMRYAL QEIETVLMAP  120
DTEEGTTSSN PEPDDKKQPQ PQLIKQRSRT WSPEIQQMSQ EIIRPEKRQR ETRELTRSGN  180
DVKQLLIKCA EALAENRIND FETLKEETRT FVSINGEPIQ RLGAYMLEGL VARRENSGTN  240
IYRALRCHQP ESNELLSYMK ILYDICPYFK FGYMAANGAI AEALRNEDKI HIIDFQIAQG  300
TQWITLIQAL AARPGGPPHV RITGIDDPVS EYARGDNLQP VGKMLSDMSK KFNIPLEFTP  360
LPVYGPAVKR EMLDIRPGEA LAVNFTLQLH HTPDESVDVN NPRDGLLRMV KGLSPKVTTL  420
VEQESNTNTT PFLTRFAETL DYYSAMFESI DDTLPRDSKE RISVEQHCLA KDIVNVAIGE  480
MEIEAKYGRV *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-139GRAS family protein