PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.956

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 447aa MW: 48354.1 Da PI: 9.6049

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.956	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	216	238	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ Fs + L++H + H evm.model.AsparagusV1_03.956 216 SCHRCGEQFSKWQALESHHLSkH 238 6*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MPTVWISLKK SLHCKSEPSD VVDPKSRAHH HHQPHHHHPH LSSILTRKAP RSGCSRSIAN 60 LKDVVIHGSK RHLERPASCS PRSIGSSDFL NPITHEVILS GNSKCELKIT GFGASCHEND 120 ENGGNGLLGS TFVGTLRPGT PGPGAHLGLQ YNPSVRGASS GHASSQRKSP LSGERVGSSL 180 SNAVFGNGVV KSQQSYVMAR ASLEGGANGG GSANVSCHRC GEQFSKWQAL ESHHLSKHAV 240 TELAEGDSSR KIVEIICRTS WLKSESNCGR IERVLKVHNM QKTLARFEEH RETVKIKASK 300 LSKKHPRCLA DGNELLRFYG TTIACSLGMN GSSSLCLSEK CNVCRVIRQG FLIKKGEVGV 360 FTTSTSGRAF DTIEVYEENP SVKKALMVCR VIAGRVHKPL DNFQEFTGQS GFDSLAGKVG 420 LYSNIEELYL LNPKALLPCF VVICKP*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MPTVWISLKK SLHCKSEPSD VVDPKSRAHH HHQPHHHHPH LSSILTRKAP RSGCSRSIAN  60
LKDVVIHGSK RHLERPASCS PRSIGSSDFL NPITHEVILS GNSKCELKIT GFGASCHEND  120
ENGGNGLLGS TFVGTLRPGT PGPGAHLGLQ YNPSVRGASS GHASSQRKSP LSGERVGSSL  180
SNAVFGNGVV KSQQSYVMAR ASLEGGANGG GSANVSCHRC GEQFSKWQAL ESHHLSKHAV  240
TELAEGDSSR KIVEIICRTS WLKSESNCGR IERVLKVHNM QKTLARFEEH RETVKIKASK  300
LSKKHPRCLA DGNELLRFYG TTIACSLGMN GSSSLCLSEK CNVCRVIRQG FLIKKGEVGV  360
FTTSTSGRAF DTIEVYEENP SVKKALMVCR VIAGRVHKPL DNFQEFTGQS GFDSLAGKVG  420
LYSNIEELYL LNPKALLPCF VVICKP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-158	C2H2 family protein