PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.925
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 265aa    MW: 29729.5 Da    PI: 4.4308
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.925genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.64e-511257123373
                          GRAS 123 lQWpaLlqaLasRpegpp.slRiT..gvgspesg.skeeleetgerLakfAeelgvpfefnvl..........vakrledl 189
                                   +QWp+L++aLa+Rpegpp +lRiT  gv +p++   + ++e++g rLa+fA++ +++fe ++            + + e +
  evm.model.AsparagusV1_03.925   1 MQWPTLIDALAKRPEGPPvQLRITvpGVRPPTPPiLTVTMENIGYRLANFARSRNLSFELHIAksknpnpsfdQEMSSELF 81 
                                   8*************99999*****55566666659999***********************99888888876544567888 PP

                          GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                                   ++ +L+++ +Ea++Vn++  l  l       ++++d++L+ + +l P++v++++++ad++s+s+  r++ +++y +  fd+
  evm.model.AsparagusV1_03.925  82 DPISLDIHDDEAVVVNCQSWLRFLQ------SETKDSFLESIHGLDPNIVTISDEDADLDSPSLTSRIMACFNYLWIPFDA 156
                                   999**************99665554......223578******************************************** PP

                          GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                                   le+ lp++s +r+ +E+  +g++i+nv+  eg++r+e  e+  +  +r++++ F +v+++e+++ ++k +l +++  g+ +
  evm.model.AsparagusV1_03.925 157 LETFLPKDSLQRAEYEAD-IGQKIENVIGYEGEQRIEGSESGVRVGQRMRNSRFASVAFGEETVREVKGILDEHA-SGWGM 235
                                   ******************.********************************************************.88999 PP

                          GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                                   ++e++ lvl+Wk+++ v+++aW
  evm.model.AsparagusV1_03.925 236 KKEEEMLVLTWKGHSSVFTTAW 257
                                   9********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MQWPTLIDAL AKRPEGPPVQ LRITVPGVRP PTPPILTVTM ENIGYRLANF ARSRNLSFEL  60
HIAKSKNPNP SFDQEMSSEL FDPISLDIHD DEAVVVNCQS WLRFLQSETK DSFLESIHGL  120
DPNIVTISDE DADLDSPSLT SRIMACFNYL WIPFDALETF LPKDSLQRAE YEADIGQKIE  180
NVIGYEGEQR IEGSESGVRV GQRMRNSRFA SVAFGEETVR EVKGILDEHA SGWGMKKEEE  240
MLVLTWKGHS SVFTTAWVPC GVEE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-68GRAS family protein