PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.776

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GRF

Protein Properties

Length: 356aa MW: 38592.2 Da PI: 6.1646

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.776	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.2	3e-23	150	193	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr +++++k+C++H++rgr+rsrk +e evm.model.AsparagusV1_03.776 150 DPEPGRCRRTDGKKWRCSRVAVANHKYCDKHINRGRHRSRKLVE 193 79***************************************998 PP
2	QLQ	28.7	4.1e-11	80	113	1	34
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 ++F+++Q+ L +Qi +++++ ++P+P+eLl evm.model.AsparagusV1_03.776 80 GPFSPSQIIVLQQQIAILRCIETKVPIPSELLIS 113 59*****************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MKGLMAASLT STPNYIFSWR EQTLIFLPSQ NDDTLLFDYI NQSAENSASS SYSESSNVKS 60 GGLGSRNLNA TINGDTVSGG PFSPSQIIVL QQQIAILRCI ETKVPIPSEL LISLGKLPLP 120 KRSSTISSEL LASKTSAAGF FQLGFMRYPD PEPGRCRRTD GKKWRCSRVA VANHKYCDKH 180 INRGRHRSRK LVEGHNSHAS RLEPTAAPSS SASSVSASEN LQLMISSFSS AQMTRMLVNE 240 NINDHMDNYQ DLSLQYPDMN SSDTLIPIST EPTQSASSLS LPPLPDSFLA SDSFLEHDSF 300 LSCEIQSEVP NVLNKSSFDV GSSKGQGSNE MSLDPIAWAA YNGGPLGEVL ANQMI*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MKGLMAASLT STPNYIFSWR EQTLIFLPSQ NDDTLLFDYI NQSAENSASS SYSESSNVKS  60
GGLGSRNLNA TINGDTVSGG PFSPSQIIVL QQQIAILRCI ETKVPIPSEL LISLGKLPLP  120
KRSSTISSEL LASKTSAAGF FQLGFMRYPD PEPGRCRRTD GKKWRCSRVA VANHKYCDKH  180
INRGRHRSRK LVEGHNSHAS RLEPTAAPSS SASSVSASEN LQLMISSFSS AQMTRMLVNE  240
NINDHMDNYQ DLSLQYPDMN SSDTLIPIST EPTQSASSLS LPPLPDSFLA SDSFLEHDSF  300
LSCEIQSEVP NVLNKSSFDV GSSKGQGSNE MSLDPIAWAA YNGGPLGEVL ANQMI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-28	GRF family protein