PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_03.549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 224aa MW: 24372.9 Da PI: 11.1856 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 10 | 32 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F++ L +H++ H evm.model.AsparagusV1_03.549 10 HPCKHCQRKFKTLQALGTHQKAH 32 78*******************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence |
MTVQDAGLSH PCKHCQRKFK TLQALGTHQK AHKVRHAILK KKQLLNRAQH RRKRQIGMCT 60 SCMSTSTFGA KVTSAIEQAY LMRLQQLAQL RRKRRHSDEP NDVIANFNRQ EPEIVSDGSS 120 SEMNKRPAST PAVSFVTSSI GKLVTAFAPF NLTAAASFRR PTLAPVSVTF TARILGSQTI 180 ASSVVFTVGG VSGVGVDEGD ADELDLGFWR HISGFRARCH GGG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 40 | 54 | KKKQLLNRAQHRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57520.1 | 1e-06 | C2H2 family protein |