PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.365
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 367aa    MW: 41968.7 Da    PI: 8.9044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.365genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77e-12228253126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   y   +C+++ +tG+C +Gd+CkF+H+
  evm.model.AsparagusV1_03.365 228 YQPDICKDYKETGYCGFGDSCKFMHD 253
                                   66789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MICGCYRSPR TPPTYLHQNR YRTTRIPLRE PNRSSSIKLF PCPPPAAARS DRNPDRPPSR  60
GLGARLEKLR PLETLTEEKL NEGFVEKVRV LMRKEKVPRR ILDEQQAPLH LLFPPETRWX  120
XXSRLFHFES NAEIQTHHDS RATSTLETET DFSRDARAIR ERVLKQAEQT LKSGGKPGSD  180
KLYKGIHGYT DYKAGFRREQ TVAGEKAGGA HGPLRASAHI RTSARFDYQP DICKDYKETG  240
YCGFGDSCKF MHDRGDYKSG WQMEKEWEEK EKARKRAMAM GGGGDGDDGG DEDDDDDNED  300
ALPFACFICR RPFEDPVVTK CRHYFCEHCA LKHHAKNKKC FVCNKPTLGI FNTAIEIRKK  360
MAEEKK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-117C3H family protein