PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | GRAS | ||||||||
Protein Properties | Length: 236aa MW: 25636.2 Da PI: 8.7376 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 189.4 | 2.4e-58 | 2 | 220 | 84 | 296 |
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.....ske 156 ++++sPi+k++h++aN aIl+a+ + ++Hi+Dfd+sqG+Q+++L++a ++R+ + + + iT+v +p+ + evm.model.AsparagusV1_03.359 2 LYDASPIFKLGHVAANFAILDAARDHPKIHIVDFDLSQGVQYASLINAVSERSrhrSLTLLVNITAVCDPTMPyntpsTVN 82 899************************************************99543335589*******987788898999 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 +l+ +g+++ +A+++gvp++f+v + +r ++le +L ++ gE+laV l+++l r+ des+s +++rd++L+ vksl P+ evm.model.AsparagusV1_03.359 83 NLKIIGDKIVTLASRFGVPVRFSV-LNRRASELERASLGCEAGECLAVYLSFALSRIADESASPANPRDQLLRRVKSLGPD 162 ***********************9.599***************************************************** PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +v +veqe++ n+++F++rf ea+ +y +++dsl+a+++r+++ r +Er+ lgr+++n evm.model.AsparagusV1_03.359 163 IVKLVEQEMNANTAPFATRFGEACGHYGSVLDSLDATMSRDDRGRFRIERA-LGRKASN 220 **************************************************9.9999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MLYDASPIFK LGHVAANFAI LDAARDHPKI HIVDFDLSQG VQYASLINAV SERSRHRSLT 60 LLVNITAVCD PTMPYNTPST VNNLKIIGDK IVTLASRFGV PVRFSVLNRR ASELERASLG 120 CEAGECLAVY LSFALSRIAD ESASPANPRD QLLRRVKSLG PDIVKLVEQE MNANTAPFAT 180 RFGEACGHYG SVLDSLDATM SRDDRGRFRI ERALGRKASN SEKGHTFVLK ASCSG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 2e-53 | GRAS family protein |