PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2915

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 329aa MW: 36521.6 Da PI: 8.3818

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2915	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.4e-06	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.AsparagusV1_03.2915 42 FVCEICNKGFQRDQNLQLHRRGH 64 89*******************88 PP
2	zf-C2H2	12.2	0.00054	119	141	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s+ k H +t+ evm.model.AsparagusV1_03.2915 119 WRCDKCSKKYAVHSDWKAHVKTC 141 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MSNSEGLLEP KAKRKRSLPG NPDPDAEVIA LSPKSLMTTN RFVCEICNKG FQRDQNLQLH 60 RRGHNLPWKL KQRSDKDTIK KKVYVCPELS CVHHSPSRAL GDLTGIKKHY CRKHGEKKWR 120 CDKCSKKYAV HSDWKAHVKT CGTREYRCGC GILFARKDSF ITHRAFCDAL AEESARLIAS 180 STSNSTTPPL FLPFSASSIW DPLISSPNPN PDLNPNPNPS SLFDVNVEHE DPLIRPPFTT 240 TPSPHLSATA LLQKASMMGP TTARHVEGIA DHVSTWQGGK KLTRDFLGVS AGEEEELMSL 300 NGLEMDMVSV DRVNSFGLPG EEECPCFL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein