PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 384aa    MW: 43224.3 Da    PI: 9.6009
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2883genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.21.6e-24125214189
                           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                    ++Y +YA+ +GF vr++ks++s++++++++r+fvC++eg+++++    + k++r+r +tr gC a+++v ++ +gkw+vt
  evm.model.AsparagusV1_03.2883 125 EYYVAYATCIGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIRKGHGKWVVT 204
                                    69****************************************9987647889999************************* PP

                           FAR1  80 kleleHnHel 89 
                                    kl ++H+H +
  evm.model.AsparagusV1_03.2883 205 KLITDHTHMV 214
                                    ********86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MFWWDVADMD SNGSASSMKF FSARKCWASS PSYIDQDSAQ ARSTSLAKVF IAMDGTLSED  60
DGLIRDSHMD LNDSITDPRM ALAFTALGVE LNTTMIPTHL LHMETAEVGE PTIGMEFDSD  120
EAAKEYYVAY ATCIGFGVRM NKSRRSRKDD TVIMRRFVCT REGFHSKRVI YDDGKKKRKR  180
GTTREGCMAM IEVIRKGHGK WVVTKLITDH THMVAIPSKV RPRVDRSMVS SNASLLHGES  240
KQYILKRWTR NATSNVVLDE RVVDSGLSFQ EYLVAWYNDL CLDAVKYGME GATSAEVYKV  300
AKNAIQKAFA EVVGAKNMQR KGQQNNQRFA RMQKMQYKMP LPKLQPKKTS SRVVQHEEAG  360
RSKRNAKEDM LDANDPDLNG GAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144179RRSRKDDTVIMRRFVCTREGFHSKRVIYDDGKKKRK
2175200KKKRKRGTTREGCMAMIEVIRKGHGK
3176201KKKRKRGTTREGCMAMIEVIRKGHGK
4177202KKKRKRGTTREGCMAMIEVIRKGHGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-24FAR1 family protein