PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2883

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 384aa MW: 43224.3 Da PI: 9.6009

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2883	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.2	1.6e-24	125	214	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevt 79 ++Y +YA+ +GF vr++ks++s++++++++r+fvC++eg+++++ + k++r+r +tr gC a+++v ++ +gkw+vt evm.model.AsparagusV1_03.2883 125 EYYVAYATCIGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIRKGHGKWVVT 204 69**************************************9987647889999********************* PP FAR1 80 kleleHnHel 89 kl ++H+H + evm.model.AsparagusV1_03.2883 205 KLITDHTHMV 214 ******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MFWWDVADMD SNGSASSMKF FSARKCWASS PSYIDQDSAQ ARSTSLAKVF IAMDGTLSED 60 DGLIRDSHMD LNDSITDPRM ALAFTALGVE LNTTMIPTHL LHMETAEVGE PTIGMEFDSD 120 EAAKEYYVAY ATCIGFGVRM NKSRRSRKDD TVIMRRFVCT REGFHSKRVI YDDGKKKRKR 180 GTTREGCMAM IEVIRKGHGK WVVTKLITDH THMVAIPSKV RPRVDRSMVS SNASLLHGES 240 KQYILKRWTR NATSNVVLDE RVVDSGLSFQ EYLVAWYNDL CLDAVKYGME GATSAEVYKV 300 AKNAIQKAFA EVVGAKNMQR KGQQNNQRFA RMQKMQYKMP LPKLQPKKTS SRVVQHEEAG 360 RSKRNAKEDM LDANDPDLNG GAH*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MFWWDVADMD SNGSASSMKF FSARKCWASS PSYIDQDSAQ ARSTSLAKVF IAMDGTLSED  60
DGLIRDSHMD LNDSITDPRM ALAFTALGVE LNTTMIPTHL LHMETAEVGE PTIGMEFDSD  120
EAAKEYYVAY ATCIGFGVRM NKSRRSRKDD TVIMRRFVCT REGFHSKRVI YDDGKKKRKR  180
GTTREGCMAM IEVIRKGHGK WVVTKLITDH THMVAIPSKV RPRVDRSMVS SNASLLHGES  240
KQYILKRWTR NATSNVVLDE RVVDSGLSFQ EYLVAWYNDL CLDAVKYGME GATSAEVYKV  300
AKNAIQKAFA EVVGAKNMQR KGQQNNQRFA RMQKMQYKMP LPKLQPKKTS SRVVQHEEAG  360
RSKRNAKEDM LDANDPDLNG GAH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	179	RRSRKDDTVIMRRFVCTREGFHSKRVIYDDGKKKRK
2	175	200	KKKRKRGTTREGCMAMIEVIRKGHGK
3	176	201	KKKRKRGTTREGCMAMIEVIRKGHGK
4	177	202	KKKRKRGTTREGCMAMIEVIRKGHGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-24	FAR1 family protein