PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.2560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21341.2 Da PI: 8.1642 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 146.5 | 2.7e-45 | 1 | 146 | 1 | 162 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 +d+fs se++Cyv+C++Cnt+lav vPs+ l+++vtv+CGhC +l ++ + ++ ++s+ l+ el ++ evm.model.AsparagusV1_03.2560 1 MDLFSPSEHLCYVHCAYCNTVLAVGVPSKRLMETVTVKCGHCNHLSFLSPRPPWVQTHCTSD--------LHLELFQD-- 70 6899**************************************98755444443333333333........32222222.. PP YABBY 81 nlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 n+ +++++s+s ss ++ d+ ++vp v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+a+knW evm.model.AsparagusV1_03.2560 71 --PCNDCRKSQSSASSSS----SSGDQTNSNVPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSMASKNW 144 ..2233333333333333....345566677889********************************************** PP YABBY 161 ah 162 a evm.model.AsparagusV1_03.2560 145 AK 146 97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MDLFSPSEHL CYVHCAYCNT VLAVGVPSKR LMETVTVKCG HCNHLSFLSP RPPWVQTHCT 60 SDLHLELFQD PCNDCRKSQS SASSSSSSGD QTNSNVPFVV KPPEKKHRLP SAYNRFMKEE 120 IQRIKAANPE IPHREAFSMA SKNWAKCEPR TTVLTADNNV TAVRPSGLQP KSVGDGFAGE 180 SFNLFREMER N* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 8e-52 | YABBY family protein |