PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2437
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 366aa    MW: 40743.1 Da    PI: 4.9419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2437genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.51.5e-875736567374
                           GRAS  67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiT 145
                                    s + + + ++ +  +k++++++P+ kf+hltaNqaIlea+e ++rvHiiDf+i qG+QW+aLlqaLa+R++g+p ++Ri 
  evm.model.AsparagusV1_03.2437  57 SWSFDFSPEDFTLCYKALNDACPYSKFAHLTANQAILEATEASDRVHIIDFGIVQGVQWAALLQALATRSAGKPsKIRIS 136
                                    344344467788899*******************************************************776669**** PP

                           GRAS 146 gvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
                                    g+ +p+ g   + +l +t+ rL++fA  l+++fef++ + + +++l+ +++r++++Ea+aVn++lql++ ldes +l + 
  evm.model.AsparagusV1_03.2437 137 GIPAPALGgsPASSLAATAIRLKDFAVLLDLDFEFEP-ILTPVHKLTESTFRIEQDEAVAVNFMLQLYNYLDESPELID- 214
                                    *****9999999*************************.799******************************99999988. PP

                           GRAS 224 rdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                      +vL++ ksl+P vv++ e ea     ++ F++rf+ aleyysa+f+sle  + res++ ++vEr   g    + +a+e
  evm.model.AsparagusV1_03.2437 215 --RVLRIAKSLNPSVVTLGEYEAGApePRSAFVNRFSTALEYYSAVFESLEPAMERESSDPRSVERCSSGIGFLKRLAAE 292
                                    ..********************988656789************************************9999999999988 PP

                           GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                    + +  +r+e+ e+W + +e +GF+++pls++a++qa+lll +++ s  y++ ++  g l l W++rpL++vS+Wr
  evm.model.AsparagusV1_03.2437 293 EGR--QRMEERENWTALMEGCGFESLPLSHYAVSQANLLLWNYHySPKYSLLDSvTGFLSLSWEERPLLTVSSWR 365
                                    876..899************************************9999*99877255566**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDPHFPSFVL PDPTFSDPFH RDPTLDAVGG LPFRYPTSPP RIRRARGKTK ESTVSTSWSF  60
DFSPEDFTLC YKALNDACPY SKFAHLTANQ AILEATEASD RVHIIDFGIV QGVQWAALLQ  120
ALATRSAGKP SKIRISGIPA PALGGSPASS LAATAIRLKD FAVLLDLDFE FEPILTPVHK  180
LTESTFRIEQ DEAVAVNFML QLYNYLDESP ELIDRVLRIA KSLNPSVVTL GEYEAGAPEP  240
RSAFVNRFST ALEYYSAVFE SLEPAMERES SDPRSVERCS SGIGFLKRLA AEEGRQRMEE  300
RENWTALMEG CGFESLPLSH YAVSQANLLL WNYHYSPKYS LLDSVTGFLS LSWEERPLLT  360
VSSWR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-121GRAS family protein