PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2376

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 309aa MW: 33921.7 Da PI: 7.3732

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2376	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.9	2.7e-11	128	174	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L ++P + kK++K ++L A++Y+k+Lq evm.model.AsparagusV1_03.2376 128 DHVLAERKRREKLSQRFISLSAIIPGL-----KKMDKNSVLGGAIKYLKQLQ 174 6889*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MDASTAACWF SDPGMMEDPS FHQWELGSLD QFANAQNLWD NIQQPFTSSF NAAVSGSSME 60 SYSPKKIPQK TSRSSTSPSI LSFGNPDSPI DDQELGLDVQ CASAGSKRSY DGRVKRDVTD 120 RPPSHNQDHV LAERKRREKL SQRFISLSAI IPGLKKMDKN SVLGGAIKYL KQLQEQVKTL 180 EEQSAKKMVE SAVIVKKCQL SDDDGSSLEE IFCEGKPNEA NNSIDVEVEA KLSGKTVLLK 240 IHCKKSKGLL VKILAEIESL KLSVLNSSCI PFTGSALDIT VMAQVEEGFS LTVKELVKKL 300 NVSFKRLM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	138	ERKRRE
2	134	139	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-49	bHLH family protein