PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2325

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GRF

Protein Properties

Length: 600aa MW: 64995 Da PI: 8.1696

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2325	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.7	4.8e-24	259	303	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk +e evm.model.AsparagusV1_03.2325 259 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKLVEG 303 79***************************************9986 PP
2	QLQ	50	9.2e-18	189	224	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 ++FT++Q+ +L++Q+l+yKy+ a++P+P++Ll + + evm.model.AsparagusV1_03.2325 189 GPFTPSQWLELEHQALIYKYIDAKAPIPSNLLIPFR 224 59******************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MEARVWKDLK SHGGSRGSQG VDEAATLPPT PARSHGSILL VIMELGGVLG FDGLVGSSSS 60 SSVFSSSPLE RQPMNQKGLF LKHGRSDAPQ EQQQDDEWSR SLKLSKAEAK ETPLLLRSSD 120 GEQMLSFSSS KPNAMLISSD ASLPFYQQTH YYPSYSSSPS SAAYFYRNAG MVAGSANVSM 180 HGAMAGFRGP FTPSQWLELE HQALIYKYID AKAPIPSNLL IPFRRSLNPS GLSNYLPGSF 240 RSSAYGWGSF HLGFPGSADP EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKL 300 VEGRSGHASK PVPAITTSQS AAAGCVGTTN GLSFAKQQQN KSLQSNAVDP SPSQFNRILT 360 SKENINDHIH DSQDLSALTR ASPKPANSLF PVSKLHDPFE GTLSETDFGL VXXXXNPSRT 420 SYPANISFDD DGHSQTQPLR HFIDDWPKSH SERTQLSISI PTDFSSSSNS PNREKLALSP 480 LRLSREFDAI NEGNERHTHN WVPISWEPTL GGPLGEVLNN TNSTPKGLSK NCSSSSLNLL 540 TDGWDSSPRL EAEASPTGVL QKTTFGSLSS SSGSSPRANN QCDDLGSNLV DPPSTVPSL*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MEARVWKDLK SHGGSRGSQG VDEAATLPPT PARSHGSILL VIMELGGVLG FDGLVGSSSS  60
SSVFSSSPLE RQPMNQKGLF LKHGRSDAPQ EQQQDDEWSR SLKLSKAEAK ETPLLLRSSD  120
GEQMLSFSSS KPNAMLISSD ASLPFYQQTH YYPSYSSSPS SAAYFYRNAG MVAGSANVSM  180
HGAMAGFRGP FTPSQWLELE HQALIYKYID AKAPIPSNLL IPFRRSLNPS GLSNYLPGSF  240
RSSAYGWGSF HLGFPGSADP EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKL  300
VEGRSGHASK PVPAITTSQS AAAGCVGTTN GLSFAKQQQN KSLQSNAVDP SPSQFNRILT  360
SKENINDHIH DSQDLSALTR ASPKPANSLF PVSKLHDPFE GTLSETDFGL VXXXXNPSRT  420
SYPANISFDD DGHSQTQPLR HFIDDWPKSH SERTQLSISI PTDFSSSSNS PNREKLALSP  480
LRLSREFDAI NEGNERHTHN WVPISWEPTL GGPLGEVLNN TNSTPKGLSK NCSSSSLNLL  540
TDGWDSSPRL EAEASPTGVL QKTTFGSLSS SSGSSPRANN QCDDLGSNLV DPPSTVPSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	9e-69	GRF family protein