PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.2050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21694.3 Da PI: 10.4763 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.6e-06 | 42 | 63 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+ F+++ L H+++H evm.model.AsparagusV1_03.2050 42 QCGECGREFKSRRALFGHMSSH 63 7*******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MDQDRSLGRH VRSPVPPPDP GGYRLREKPK RTTGFDDIGE NQCGECGREF KSRRALFGHM 60 SSHSQRAQRA KEEDDARSLS KKQKRVSPEY PKEQVDGALA LMMLSRDQGN WGNGVPGVSD 120 YDDNSLKKKK KKKKKKKKNG SNGLGADAAI NKAGGFQCRV CCKVFGSGQA LGGHWRAHSS 180 RATLRSVDGD DAYFGAQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | KKKKKKK |
2 | 127 | 135 | KKKKKKKKK |
3 | 127 | 138 | KKKKKKKKKKKK |
4 | 128 | 134 | KKKKKKK |
5 | 128 | 136 | KKKKKKKKK |
6 | 128 | 139 | KKKKKKKKKKKK |
7 | 129 | 135 | KKKKKKK |
8 | 129 | 137 | KKKKKKKKK |
9 | 129 | 140 | KKKKKKKKKKKK |
10 | 130 | 136 | KKKKKKK |
11 | 130 | 138 | KKKKKKKKK |
12 | 131 | 137 | KKKKKKK |
13 | 132 | 138 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-10 | C2H2 family protein |