PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.2048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 23425 Da PI: 8.8167 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H r+H evm.model.AsparagusV1_03.2048 170 HECSICGRLFRSGQALGGHKRSH 192 78******************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MDQDRKLQCQ FCPKFFPCAR SLDDHMSIHV PPLAAAGYGL RGKPKRTTSF GDLQCAENSE 60 GRMKSHSQRT QGAKEEDDER SLSKKQRRIS SEYPKEKVDG AIALMKLSRD KRKRGNGAPE 120 YSDENPAKHQ ELSFEDEDDD SLKRRRRKKK SGSNGLEADG DRDEAEGLGH ECSICGRLFR 180 SGQALGGHKR SHSSKVAPKI VDHDADLGGQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 149 | LKRRRRKK |
2 | 143 | 148 | KRRRRK |
3 | 143 | 149 | KRRRRKK |
4 | 144 | 150 | KRRRRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26590.1 | 1e-09 | C2H2 family protein |