PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1526

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 618aa MW: 69826.4 Da PI: 5.1428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1526	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.4	1.9e-07	49	95	2	49
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkte 49 Yn+Y ++GFsv k k+ +ng + +rt+ Csk g++ e ++++ evm.model.AsparagusV1_03.1526 49 LYNDYVVRTGFSVHKGDLWKN-TNGVVRQRTYLCSKPGHALAEPRQRK 95 7*****************9.9999**********9988777733 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MESSESNSQI QRSTDGKEIS HSAKHGENED DGVLRIRMKV YSEEEAYDLY NDYVVRTGFS 60 VHKGDLWKNT NGVVRQRTYL CSKPGHALAE PRQRKYLRSN RTIWLDDEII RSAVDSQIKP 120 SKAFSSVTMG LEGHDNSKIM MHDCCNIPTT EKLTMIKAED VQLEAETVWG AMHGLETFSQ 180 LVYVIDNELM VPADIYIEDG PIFPHRGVLL DTGRNYFAPR DIMRLIRAMS YNKLNVFHWH 240 VTDSHSFPIV LPSEPELANK GSYGSKMQYS PAVVRAIVEY GMSHGVRVMP EIDTPAHTGS 300 WAGAYPDIIT CEDTFWLPSG SDWVDRLAAE PGTGQLNPLN PQTYEVVNNM IKDTVSLFPE 360 NFFHAGADEV TPACWKTDPS IQKFLSNNST LNEILELYIN RTYPYIRSHN RTVVYWEDVL 420 LDSAIHVDES TLPKETTILQ SWNNGSNNTK RIVSAGYRAI VSSADFYYLD CGHGAFMGND 480 SRYDKQLGDD EGVPFNYKGG SGGSWCGPFK TWQRIYSYDI THGLREEEAK LVIGGEVALW 540 AEQADPTVMD AMIWPRASAM AEVLWSGNRD ENGNKRFAEA IDRLNEWRYR MVGRAIGAEP 600 LQPLWCVRNP GMCNFVQ*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MESSESNSQI QRSTDGKEIS HSAKHGENED DGVLRIRMKV YSEEEAYDLY NDYVVRTGFS  60
VHKGDLWKNT NGVVRQRTYL CSKPGHALAE PRQRKYLRSN RTIWLDDEII RSAVDSQIKP  120
SKAFSSVTMG LEGHDNSKIM MHDCCNIPTT EKLTMIKAED VQLEAETVWG AMHGLETFSQ  180
LVYVIDNELM VPADIYIEDG PIFPHRGVLL DTGRNYFAPR DIMRLIRAMS YNKLNVFHWH  240
VTDSHSFPIV LPSEPELANK GSYGSKMQYS PAVVRAIVEY GMSHGVRVMP EIDTPAHTGS  300
WAGAYPDIIT CEDTFWLPSG SDWVDRLAAE PGTGQLNPLN PQTYEVVNNM IKDTVSLFPE  360
NFFHAGADEV TPACWKTDPS IQKFLSNNST LNEILELYIN RTYPYIRSHN RTVVYWEDVL  420
LDSAIHVDES TLPKETTILQ SWNNGSNNTK RIVSAGYRAI VSSADFYYLD CGHGAFMGND  480
SRYDKQLGDD EGVPFNYKGG SGGSWCGPFK TWQRIYSYDI THGLREEEAK LVIGGEVALW  540
AEQADPTVMD AMIWPRASAM AEVLWSGNRD ENGNKRFAEA IDRLNEWRYR MVGRAIGAEP  600
LQPLWCVRNP GMCNFVQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	5e-08	FAR1 family protein