PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_03.1220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 296aa MW: 32424.8 Da PI: 10.2943 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 321.1 | 3.4e-98 | 1 | 279 | 1 | 300 |
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd..maflqrdkalaernkalv 75 mdddg + r +g y+e+ +k lglqlms ++ +rd+k+ +n + +++ + e+ m+f rd ++++ evm.model.AsparagusV1_03.1220 1 MDDDGGLNmRSWGsYFEQP--MKGSLGLQLMSNLTaDRDTKPLLSNGGFLHRDRGIPEHSapMDF-VRDGWIHH-----N 72 999999999****999999..***********9988******99999999998887555444***.9******9.....4 PP GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr 155 nk+l++l++++ +g +++++t+ ++++++ l+ + + +eek+ + ++ ++ +++kkr++ evm.model.AsparagusV1_03.1220 73 RDTNKILHVLPMNHH------QGFSMIPDTSGAHTIHM-----LQTPHPP--KEEKIAHID--NSI--DNNDATQKKRSQ 135 4568999*9998885......68899********9999.....4333333..333333322..222..222333444556 PP GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235 +++ k++k+kk+kk +++ +++ ++ ++ ++ kks+dlv+ng++lD s++P+PvCsCtG ++qCY+WG GGWqSaCC evm.model.AsparagusV1_03.1220 136 GRTIKAPKQKKPKKVNNQGRDDLSNGA-ISKGNNGKKSTDLVINGIDLDLSGIPPPVCSCTGNPQQCYRWGVGGWQSACC 214 666666666666665545444443333.3678899********************************************* PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 tt+iS+yPLP+s+krrgaRiagrKmS gafkk+LekLa+eG++lsnp+DLk++WAkHGtnkfvti evm.model.AsparagusV1_03.1220 215 TTSISTYPLPMSSKRRGARIAGRKMSLGAFKKVLEKLAGEGHNLSNPIDLKTFWAKHGTNKFVTI 279 ****************************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence |
MDDDGGLNMR SWGSYFEQPM KGSLGLQLMS NLTADRDTKP LLSNGGFLHR DRGIPEHSAP 60 MDFVRDGWIH HNRDTNKILH VLPMNHHQGF SMIPDTSGAH TIHMLQTPHP PKEEKIAHID 120 NSIDNNDATQ KKRSQGRTIK APKQKKPKKV NNQGRDDLSN GAISKGNNGK KSTDLVINGI 180 DLDLSGIPPP VCSCTGNPQQ CYRWGVGGWQ SACCTTSIST YPLPMSSKRR GARIAGRKMS 240 LGAFKKVLEK LAGEGHNLSN PIDLKTFWAK HGTNKFVTIS GGGAQVTSKA SVKIEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01930.1 | 2e-77 | BBR-BPC family protein |