PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1212

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 633aa MW: 69921.9 Da PI: 6.2699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1212	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	384	404	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++ G C+ G+ CkF+H+ evm.model.AsparagusV1_03.1212 384 YCNFYLA-GRCQQGEACKFSHD 404 69999.***********7 PP
2	zf-CCCH	22	3e-07	438	458	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ G C +G+rC+F+H evm.model.AsparagusV1_03.1212 438 PCHNYMSKGMCIRGERCNFSH 458 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MTTLNLFSSS CFTSRRSHLD SASYRTLVRI FSLCGGGSLD SSNPNPNIDG NPNSAAEEFV 60 RQPSTKKDSV PRESGDGNCQ LAEESGDGKR RNDEGGGIEK GVMNDCAKLF DAPEQDEFDA 120 SGNKKFENFE KTAIVETQDG SFGFKKQEKL GIEREKDVSS QEVEDPDECF NGESVERKRE 180 IGEGTQPEAR TTADPLIECF GVRHVNADEI NDEDFEEGEI PNDFEKPNES VDLMHEPAPY 240 EDKKLEEGSV CEGFDKNQSL SYTMPTFSAL NLTEGHYDQG LNAFGDNNCL EPEHKKSFRY 300 TDDDVKQRAG VPDTLVLSTN KEKENPSRAE VAEVQFKKKR PVLTEERKVT KKKSKRRKRA 360 QKEREQGVKR LKLLPVVKPK EVKYCNFYLA GRCQQGEACK FSHDTTPLTK SQPCKYLATD 420 SCLKGDDCPF DHELSKYPCH NYMSKGMCIR GERCNFSHKM PMTEGSSPVS VKGKAADPSS 480 LVSQPKSSTA WSSQLNIKKL SAGNLVDNAK LPTPISPQLI MKKPLTENSV NNLKLSTTIS 540 PPPPGIRFVS FGKGPSESGG NKPKGNWQQH KKEKLLAAAH NILSSQHKSF PAAAQSGTEA 600 NTNACKNKSD DGSLQTEVSE ASKLLEEFLF CS*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MTTLNLFSSS CFTSRRSHLD SASYRTLVRI FSLCGGGSLD SSNPNPNIDG NPNSAAEEFV  60
RQPSTKKDSV PRESGDGNCQ LAEESGDGKR RNDEGGGIEK GVMNDCAKLF DAPEQDEFDA  120
SGNKKFENFE KTAIVETQDG SFGFKKQEKL GIEREKDVSS QEVEDPDECF NGESVERKRE  180
IGEGTQPEAR TTADPLIECF GVRHVNADEI NDEDFEEGEI PNDFEKPNES VDLMHEPAPY  240
EDKKLEEGSV CEGFDKNQSL SYTMPTFSAL NLTEGHYDQG LNAFGDNNCL EPEHKKSFRY  300
TDDDVKQRAG VPDTLVLSTN KEKENPSRAE VAEVQFKKKR PVLTEERKVT KKKSKRRKRA  360
QKEREQGVKR LKLLPVVKPK EVKYCNFYLA GRCQQGEACK FSHDTTPLTK SQPCKYLATD  420
SCLKGDDCPF DHELSKYPCH NYMSKGMCIR GERCNFSHKM PMTEGSSPVS VKGKAADPSS  480
LVSQPKSSTA WSSQLNIKKL SAGNLVDNAK LPTPISPQLI MKKPLTENSV NNLKLSTTIS  540
PPPPGIRFVS FGKGPSESGG NKPKGNWQQH KKEKLLAAAH NILSSQHKSF PAAAQSGTEA  600
NTNACKNKSD DGSLQTEVSE ASKLLEEFLF CS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	359	KKKRPVLTEERKVTKKKSKRRKR
2	337	362	KKKRPVLTEERKVTKKKSKRRKRAQK
3	338	360	KKKRPVLTEERKVTKKKSKRRKR